Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1419 ATGGCGCAGAAGCGTCCTTCCCCTCTGGATGAGCCACCCACGGCCTCTTCTTCAGATTCCGAGGAAGAAGAAACGCAAAACCCATCTTCTCTGCGGCATGGAAAAGAAGAGGAAGAAGCTTCGTCGGGAGAAGAGGATGAAGAATCCTCCGGAGAAGAGGCAGAAGATGACGATCTTCCACCACCCATCACCAAAACCAACGCTCCACTCGCTCTCACGAAACCTCATCCCGAATCCGCATCTTCTGATTCTGAAACAGAATCCGAATCAGAGACCGAGTCGGAAACTGAATCCACTCCTGCGAAGGCGGTGAAGCCTCTCGCGACCAAGCCCATGGACCAGGCACAAAAGCCCAAGGCCCTACCTTCTCCGGCGCCACCCAAACCGGCTCTTAAACGCCCCGCCGAGAACAGCAACGCCCACGTCCCGCAGAAAAAGAAGAAATCCGGCGATTCTTCTTCTTCCCCTGCCGCTTCCGACGAAGAGATGGAGGAAGGGAAGAAGTCCGGGGATCAAATGAAGAAGTTTCAGAGGCTGTGGAGCGAGGAGGACGAACTCGCCATTCTGAAGGGCTTGGCTGATTTCACCACAAAAACAGGGCAGGACCCTCTTAAGTTTGCGGGTGGAAATGCTTTCCATGATTTCTTGAAGAAGTCGCTGCATGTGGAAGTTACCAGCAATCAGCTGAAGGAGAAGGCTCGGAGACTGAAGAAGAAGTATGAGATCGCTGCAGTGAAAGGGAATAGCGCTGATGGCCTTATATTTTCAAAGCCGCACGATAAGAAAACGTTTGAATTGTCGAAAAAGGTTTGGGGGAGTGAGCAAGATGGTGGAGTGGCCAATGGGGCAGTGGAAAAGCCCAAGGCTAACGGGAGTGCTGCTAAGAGTCCGAAGAAGAAGGAAACCGGTAGTAGGAATGTGGCTTCAGCCAAGAAAGCTAAACCGGAACCGAAACAGGAGACGGTGCCAGCGACGCGCACGGAGTTCAAGGAATCTGAAAAGATGCATATCGATCAAAAGCCTGTTAATTGTGAAGTGAGTATGTTTTTGCATGCAGTCTCCCACTTTAAAGAGGGTCTGGGTGTTTGTGGCTTGGACGAGGAGGGTGTGAAGAAGGGGTTGGAATTGATTGGTGAATCGAAGAGGACAGAGTTGAGGGCAAAGTGGAAGAAATTACAACGTACTGAATTGGAACTGTTTGCTAATCGCTCAGAACTGATTGGGGAGCAAACTAAATTGATAGTTGAGGCACTTCAGTCGTCCAACCATTAG 1272 0.5079 MAQKRPSPLDEPPTASSSDSEEEETQNPSSLRHGKEEEEASSGEEDEESSGEEAEDDDLPPPITKTNAPLALTKPHPESASSDSETESESETESETESTPAKAVKPLATKPMDQAQKPKALPSPAPPKPALKRPAENSNAHVPQKKKKSGDSSSSPAASDEEMEEGKKSGDQMKKFQRLWSEEDELAILKGLADFTTKTGQDPLKFAGGNAFHDFLKKSLHVEVTSNQLKEKARRLKKKYEIAAVKGNSADGLIFSKPHDKKTFELSKKVWGSEQDGGVANGAVEKPKANGSAAKSPKKKETGSRNVASAKKAKPEPKQETVPATRTEFKESEKMHIDQKPVNCEVSMFLHAVSHFKEGLGVCGLDEEGVKKGLELIGESKRTELRAKWKKLQRTELELFANRSELIGEQTKLIVEALQSSNH* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1419 423 MobiDBLite consensus disorder prediction 275 334 - -
Vra10g1419 423 PANTHER STOREKEEPER PROTEIN-LIKE 1 422 - -
Vra10g1419 423 Coils Coil 226 246 - -
Vra10g1419 423 Pfam Protein of unknown function, DUF573 176 272 IPR007592 GO:0006355
Vra10g1419 423 MobiDBLite consensus disorder prediction 25 39 - -
Vra10g1419 423 MobiDBLite consensus disorder prediction 1 175 - -
Vra10g1419 423 MobiDBLite consensus disorder prediction 40 57 - -
Vra10g1419 423 MobiDBLite consensus disorder prediction 160 175 - -
Vra10g1419 423 PANTHER BNAANNG10740D PROTEIN-RELATED 1 422 IPR007592 GO:0006355
Vra10g1419 423 MobiDBLite consensus disorder prediction 292 334 - -
Vra10g1419 423 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1419 Vra-Chr10 19316681 19318226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1419 4 417 GeBP Transcription Factor Family AT1G61730 31.765 2.22e-33 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vra10g1419 DUF573 2.8e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1419 - - gmx:100791520 451.44