Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1416 ATGTTTGAGGCTTGGCTTTCTCTCAAAAAGACCCTTCAGTGCAAGCCACAACCAAATCATGTTCATGATCCGAAGACTATTAGACAACAAAAAGGTAATCAGAGAACAAAGTTGGGCAATCTTGAGAATTCAAATACCAAAGATTTCATCCATGGAAGCAATAGACACTCTAAAAATCCCCTGACTTTTAAAGGAGACATTGAGATCACTGGTCCCATAATCGACGAAATTACTCTTGATAGCTCAAACCATGAAACTAGTCGACGTTTTCCTTGTCCTCAAAGCAATAGCAGCAATAAAGGTTCTCGCAGAACACGAAGGTCAGATACATCTTCGAGGATAGCATATCCTCTAGATCACAATGAAGCAAATGTGTTCTCCAATACAAGGACTTTGGTTCGGATGGATTCTGATGTCTTTTCATCATTGACATGTGATAAATGTGGCGAGAAATTAAAAAATCCTGTTGCTGTAGAAGCACACAATATCTCCGATCATTCAGTGATTGAGCTTGAGGAAGATTCGTCGAGACAGATCATAGAAACAATATGTGGAACAAGCTCGGTTTACTCTGAAAGCATGTTGGGTGAGATTGACTGCATCTTAAAGGTTGTGAATATACCAAAAACCTTTGCTTGCTTTGAGGAGTATAGAGAAAAGGTGAAGGAAAAGGCTGACAAACAAAAGAAGAAACACCCTCGTTGTGTGGCTGATGGAAACGAACTTTTAAGGTTCCACGGCACAACAATTGCATGCTCTCTGGGCATAAACAGCTGTTATAGGCTGTGCAGTTTAGACTATTGTGGTATATGTCAAATTCTGAGACACGGGTTCTCGACGAACAAGGAATTCAAAGGTGCATTGGGGGTTTACACAACTTCCACAAGTGGGAAAGCCTTTGAATCCATTTCCATAATGACATCCCATGAGAGACCATTTTCGAGAAAGTCCATCATAGTGTGCAGAGTAATAGCTGGGAGAATTTGTAGCCCTCTTGAAGGAATTGCAGAAAGGGCTGATTCATTGGCAGAAAAGATAAATGGGCATTCAGATGTTGAGGAACTGTACGTGTTAAATCCCAGAGCCCTTCTTCCTTGCTTTGTGATAATCTACAAACAGCAAACAGCCAAGTTTAGAAGGGTCGGCCCAAGCTTAAGGATAGGTAGCTTTTAA 1173 0.4092 MFEAWLSLKKTLQCKPQPNHVHDPKTIRQQKGNQRTKLGNLENSNTKDFIHGSNRHSKNPLTFKGDIEITGPIIDEITLDSSNHETSRRFPCPQSNSSNKGSRRTRRSDTSSRIAYPLDHNEANVFSNTRTLVRMDSDVFSSLTCDKCGEKLKNPVAVEAHNISDHSVIELEEDSSRQIIETICGTSSVYSESMLGEIDCILKVVNIPKTFACFEEYREKVKEKADKQKKKHPRCVADGNELLRFHGTTIACSLGINSCYRLCSLDYCGICQILRHGFSTNKEFKGALGVYTTSTSGKAFESISIMTSHERPFSRKSIIVCRVIAGRICSPLEGIAERADSLAEKINGHSDVEELYVLNPRALLPCFVIIYKQQTAKFRRVGPSLRIGSF* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1416 390 Gene3D - 165 377 - -
Vra10g1416 390 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 373 - -
Vra10g1416 390 ProSitePatterns Zinc finger C2H2 type domain signature. 145 166 IPR013087 -
Vra10g1416 390 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 373 - -
Vra10g1416 390 SUPERFAMILY ADP-ribosylation 233 374 - -
Vra10g1416 390 MobiDBLite consensus disorder prediction 82 112 - -
Vra10g1416 390 MobiDBLite consensus disorder prediction 16 57 - -
Vra10g1416 390 MobiDBLite consensus disorder prediction 82 101 - -
Vra10g1416 390 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1416 Vra-Chr10 19307550 19309046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1416 4 372 C2H2 Transcription Factor Family AT5G54630 40.312 2.06e-90 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1416 - - gmx:100807216 563.148