Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1411 ATGCTCAGTTTACACATCCCTTTCCCCAAAACCCATCCTGCAACCCCACAAATGGAGTATGAAGATGAGGATTGGTTATGTGTAACTATGGAAGAGTTTTCTCTTGCTACTGAAAATGGTTCTAGCAAACAAAGGATAGGTCGAAAGAGGAACTATGATGATGACACCAGAGAATTCAAATCAAAAAACCTAGAGACAGAACGAAGGAGGAGGGAGAAGCTCAGTAGCAGACTCTTGATGCTTCGTGCTGTAGTGCCAATCATCACAAATATGAACAAAGCCACAATTATTGAAGATGCCATCACCTACATTGAGAAGCTTCAAGACAAAGTCCAGAGTCTCAGTCAAGAGCTTCACCAAATGGAAACCACTTCAGAGGAAACAGGAGACACAAAAACAGATGAAATTGATGCTGCACAAGATATGAAGGATTTGGGAATACAGGAAGAAGTTAGAGTGGCACAAATAGACGGAAAGAAACTCTGGGTTAAGATCATCATTGAGAAGAGAAAAGGAAGATTCAGAAAATTGATGGAAGCTCTCAATAATTTCAGCATTGAACTCATAGACACCAATCTCACAACCACAAAAGGAGCATTTCTTATTTCAAGCTGTATACAGATGAATAGAGGAACTATTATTGTAGATGCTATCACCTACATTGAGAAGCTGCAAGATGAAGTCCAGAATCTCAGTCAACAACTTCACCAAATGGAAGCAACTTCAGAGGAAACAACAGAGACAAAAATAGATGAAGTTGAAGCTGTGGAAGATATGAAGAATTGGGGGATACAGGAAGAGGTCACTGTGGCACAAATAGATGAGAATAAGTTCTGGGTCAAGATCATCATTGAGAAAAAGAGAGGAAGTTTCAGCAAGCTGATGGAGACACTCAACTACTTTGGCATTGAGCTCATGGACACTAATCTGACTACCACAAAAGGAGCATTTCTGATTACAAGCTGCATACAGGGAAAAAATGGAGAAAGACTTGAAATTAATCAAATCAAGGATGTGATACAAGATATTATCAATGACATGTAG 1044 0.3937 MLSLHIPFPKTHPATPQMEYEDEDWLCVTMEEFSLATENGSSKQRIGRKRNYDDDTREFKSKNLETERRRREKLSSRLLMLRAVVPIITNMNKATIIEDAITYIEKLQDKVQSLSQELHQMETTSEETGDTKTDEIDAAQDMKDLGIQEEVRVAQIDGKKLWVKIIIEKRKGRFRKLMEALNNFSIELIDTNLTTTKGAFLISSCIQMNRGTIIVDAITYIEKLQDEVQNLSQQLHQMEATSEETTETKIDEVEAVEDMKNWGIQEEVTVAQIDENKFWVKIIIEKKRGSFSKLMETLNYFGIELMDTNLTTTKGAFLITSCIQGKNGERLEINQIKDVIQDIINDM* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1411 347 Coils Coil 97 124 - -
Vra10g1411 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 123 IPR036638 GO:0046983
Vra10g1411 347 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 26 207 - -
Vra10g1411 347 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 207 346 - -
Vra10g1411 347 Coils Coil 214 248 - -
Vra10g1411 347 Gene3D - 175 260 IPR036638 GO:0046983
Vra10g1411 347 PANTHER TRANSCRIPTION FACTOR DYT1 207 346 - -
Vra10g1411 347 PANTHER TRANSCRIPTION FACTOR DYT1 26 207 - -
Vra10g1411 347 Pfam Helix-loop-helix DNA-binding domain 62 108 IPR011598 GO:0046983
Vra10g1411 347 Gene3D - 50 124 IPR036638 GO:0046983
Vra10g1411 347 SMART finulus 64 113 IPR011598 GO:0046983
Vra10g1411 347 SMART finulus 165 230 IPR011598 GO:0046983
Vra10g1411 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 58 107 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1411 Vra-Chr10 19272108 19276697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1411 208 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 40.690 7.21e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra10g1411 HLH 8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1411 - - vun:114186874 618.231