Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1406 ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTAATTCAACAAGAAGTGTGTTCCCTCTTATCTCATCAACATGTTCCGTGGCAGCAGCTGATGCAGGAAACTACAGTACTTGGCAAAGCACTGATTTCGTGGATTTGAAGGGAACTAGGTCTTGCGCTGAGGACATTAATAACTTTATTTCTTCTGATAATTCTCTGAGTTTTCTTGATGTTGAGAAGCCCCAGCAGAGGGACTCGGCTGGTGGAACTGGAAGCATCCTCACCGATTCCACCTTACAAATGATAGGTTTTGGCATGTCATCTTCAACTTCATCGAATTGGAATCAATCTTTATTAGGGAGCGATTTTCATTCTGTGCTTCAAGGAGAAACAGGCATGGATGGCGATCTACCAAAGAATTTCTCATCTTCTGGTGGCCAAGGTTCCACCGTTGATGCTTTCAAGTCAATGAACCAAGAATTTTCCTTGGATCAGCAGAGTCTGAATTCCGTTGTTACGAGCACCGGATCATTATCTGGTGGTTTTCCAGTTGTTTCAGCCTCCTATAGTTACCCTTCAACCTTGATACAAGGCTTATACGACCCTGAGCCTCAACCACAGCCACAGAACTCACTTTTCACCAACCCCCCCATGTCCTATTCTTCATCTACCGCAAACTATGGGACATGTTCCAATGAACTGTCACCAACTTGGGCCAAAATCTCTTCACTTCTCAAGCCCTCAACGCCAAAACAGCAGCTTAGTGGGTTGCACTTTTCCAACAACACTTCTTTCTGGAATGGTTCGGCCGAAGCACTTCATGACATAAGAGCAGGTGTTTTTGCTTCCTCACAGGCGCAATATCAAACGCCAAAATTTGAAGAGAAATCCAACAGCTCCAATAATCTATTAAACAAGCTCAAGAGAGAAGAATCACCAGACGCAATCTCATCTGCGAAGAAAAATTCTTCTGAGCCTGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTAAGGAAGGAAAAGCTAGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGACGGACACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTGTTGAGCACTCCATATATTAAAAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGAGTCAGAAGGGCGAAAAGAAGATCTGAGAAGCCGAGGGCTGTGTTTAGTACCGATTTCGAGCACGTTCCCGGTGGCTAATGAGAGCAGTGTTGATTTCTGGACGCCAACATTCGGAGGTGCAGTGATTGGCAGGTAG 1359 0.4474 MAEEFQAAICGESWWNINSTRSVFPLISSTCSVAAADAGNYSTWQSTDFVDLKGTRSCAEDINNFISSDNSLSFLDVEKPQQRDSAGGTGSILTDSTLQMIGFGMSSSTSSNWNQSLLGSDFHSVLQGETGMDGDLPKNFSSSGGQGSTVDAFKSMNQEFSLDQQSLNSVVTSTGSLSGGFPVVSASYSYPSTLIQGLYDPEPQPQPQNSLFTNPPMSYSSSTANYGTCSNELSPTWAKISSLLKPSTPKQQLSGLHFSNNTSFWNGSAEALHDIRAGVFASSQAQYQTPKFEEKSNSSNNLLNKLKREESPDAISSAKKNSSEPAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVLSTPYIKNGAPIQHQQDCDNLKESEGRKEDLRSRGLCLVPISSTFPVANESSVDFWTPTFGGAVIGR* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1406 452 MobiDBLite consensus disorder prediction 307 334 - -
Vra10g1406 452 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 92 440 - -
Vra10g1406 452 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 381 IPR011598 GO:0046983
Vra10g1406 452 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 387 IPR036638 GO:0046983
Vra10g1406 452 PANTHER TRANSCRIPTION FACTOR BHLH123 92 440 - -
Vra10g1406 452 Gene3D - 342 393 IPR036638 GO:0046983
Vra10g1406 452 CDD bHLH_AtbHLH_like 338 385 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1406 Vra-Chr10 19244734 19248046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1406 1 447 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 39.700 8.54e-69 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1406 - - gmx:100805087 686.411