Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1403 ATGACCAACAGGAGAGTGAGATGGAACAAACTTGATATCATTATGTTTGCTTATGCTTGTATATCAAACCTTCAAAATACGTCTTATGCAGACGATGCCTTGACTCCAACATCTTCCATTGCAGATGGCCAAGAACTCATTTCTCCTGGACAGAATTTTTCTCTTGGATTCTTCACTCCAGGAGCATCAAAGAGCCGCTACATAGGGATATGGTACAAGAATATTACCCCTCAAACCATAGTTTGGGTAGCAAACAGAGATAACCCACTTAACGACTCCAGAGGAAATTTAACCATTGCTGCTGATGGTAATATTGTACTTTTTGATGGAGCAGGTAACAGAATATGGTTTACAAATTCATCAAGGTCAATCGAAGAACCAATTGCAAAGCTGTTGGATTCTGGAAACTTTGTGTTGATGGATGGCAAGAAGCATGATTCTAAAGGTTACATATGGCAGAGCTTTGATAATCCAACAGACACAATGTTACCTGGGTTGATGTTGGGTTGGGATAAGAACTTAGGTATCAATAGATATTTGACTTCTTGGAAGAGTGCTAATGACCCCTCTCCTGGAAACTTTACCTACAGGTTTGACCAGATAGAATTTCCTGAGTTGGTAATCCGCCAGGGAACGAACATCACATTCAGAAGTGGAATTTGGGATGGCATCCGTTTTAATTCAGATGATTGGTTGTCCTTCATTGGAATTACAGCCTTCAAGCCACAACTTTCAGTAAATAGCACTGTGGCAGTGTATTGGGATGAACCTGGAGATAGATTGTCAAGATATGTGATGAAGGATGATGGACTCCTTCAAAGATATATCTGGGACAACAAAAATTTTAAGTGGACTCCGATGCATGAGGCAAGAAAGGACTTTTGTGATAACTACGGAGCATGTGGGGTGAACGGTATTTGCAATATGAAGGATATTCCTGCTTACTGCGATTGCTTGAAAGGGTTTACACCACATTCTCCGGAAGATTGGGATTCTTTTAACTGGTCTGGTGGGTGCATCAGGAGAACACCCTTAAACTGCACACAAGCTGATAGGTTTCAGAAACTAAGCTGGGTTAAACTACCCATGTTGTTGCAATTTTGGACTAATGAAAGCATGAATCTTGAAGAATGCAAGGTGGAGTGCTTGAAGAACTGTTCCTGCACGGCGTACGCAAATTCAGCCGTGAATGAAGGGCCACATGGATGCTTGCTATGGTTTGGGGACTTGACTGACATTCGGCAGCTTATAAATGAAGAGGGTGTACAACTTGATCTTTATTTAAGGTTAGCCGCTTCAGAAATAGAGTCCACTGCTAATGCAAGTAAAAGGAAAAACATTGCACTGATTATCTCGGTACCTGTGGCACTGCTTCTTTGTTGTATCATTTTCTACCTTTCTAAGAAGTATATAAAAGGGAGGACAAGCACTAGTTCGGTCACAGTCACAAGTCACAGAAATCAAAATGAAGATCAAGCATCACCTATTTTTGATATAGATACTATTCTGGCTGCTACAAACAATTTTTCCATTGAGAACAAGATCGGGGAAGGTGGTTTTGGCCCAGTATACAGGGGTAAATTGGCTAATGGACAAGAAATAGCTGTGAAAAGGCTATCAAAAACCTCAAAACAAGGTATCTCAGAGTTTATGAATGAAGTTGGACTGGTAGCCAAACTCCAACACCGTAATCTTGTGAGTGTTTTGGGAGGGTGCACTCAAAGAGAGGAAAGAATGCTGATCTATGAATACATGCCAAATAGTAGCTTGGACCACTTCATTTTTGATCCTATACAAGGAAAATTTTTGAACTGGAGGAAACGATACGAAATTGTCATTGGGATTGCTAGAGGACTACTTTATCTCCACCAAGATTCAAAACTAACCATCATCCATAGGGATCTAAAAACTAGTAACATTCTACTAGACAGCCAATTGAACCCCAAAATTTCGGATTTTGGTGTGGCCCGCATCGTTGAAGGAGATCATTCTTCAATAACAACAGAAGAGATTGCTGGGACAATTGGTTACATGCCTCATGAGTATGCAGTAAACGGGATTCTTTCCCTGAAGTCTGATGTATATAGCTTCGGAGTTATAGTGTTAGAGATACTGAGCGGGATCAGAAGTAGTCACTACAAAGTCAAGCATCCAGATGATGATCACAATCTGTTGGGGCAGGCATGGACATCATGGAAAGATGGACGAGCTGTGGGATTTATGGATATTAATTTAGACCTCAGAGTGGTTCCATCAGAATTACTAAGGTGTCTGCAAGTTGGTCTCTTGTGTGTTCAAAAGTTACCTGAAGATAGACCAACTATGTCTTCTGTTGTTTTTATGTTGAGCAATGAAAGCATTGTTCTTCCCCAACCAAAGAAAACTGGCTTCTTTGAACAAGAGTCAGAGTATCATCATGCCTACAGCGAGAATGAGAGTTTTAGTAACAATGCTATGACTATAACTCTATTAGAAGCTCGAAGTTAG 2487 0.4057 MTNRRVRWNKLDIIMFAYACISNLQNTSYADDALTPTSSIADGQELISPGQNFSLGFFTPGASKSRYIGIWYKNITPQTIVWVANRDNPLNDSRGNLTIAADGNIVLFDGAGNRIWFTNSSRSIEEPIAKLLDSGNFVLMDGKKHDSKGYIWQSFDNPTDTMLPGLMLGWDKNLGINRYLTSWKSANDPSPGNFTYRFDQIEFPELVIRQGTNITFRSGIWDGIRFNSDDWLSFIGITAFKPQLSVNSTVAVYWDEPGDRLSRYVMKDDGLLQRYIWDNKNFKWTPMHEARKDFCDNYGACGVNGICNMKDIPAYCDCLKGFTPHSPEDWDSFNWSGGCIRRTPLNCTQADRFQKLSWVKLPMLLQFWTNESMNLEECKVECLKNCSCTAYANSAVNEGPHGCLLWFGDLTDIRQLINEEGVQLDLYLRLAASEIESTANASKRKNIALIISVPVALLLCCIIFYLSKKYIKGRTSTSSVTVTSHRNQNEDQASPIFDIDTILAATNNFSIENKIGEGGFGPVYRGKLANGQEIAVKRLSKTSKQGISEFMNEVGLVAKLQHRNLVSVLGGCTQREERMLIYEYMPNSSLDHFIFDPIQGKFLNWRKRYEIVIGIARGLLYLHQDSKLTIIHRDLKTSNILLDSQLNPKISDFGVARIVEGDHSSITTEEIAGTIGYMPHEYAVNGILSLKSDVYSFGVIVLEILSGIRSSHYKVKHPDDDHNLLGQAWTSWKDGRAVGFMDINLDLRVVPSELLRCLQVGLLCVQKLPEDRPTMSSVVFMLSNESIVLPQPKKTGFFEQESEYHHAYSENESFSNNAMTITLLEARS* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1403 828 Gene3D Transferase(Phosphotransferase) domain 1 585 793 - -
Vra10g1403 828 ProSiteProfiles Bulb-type lectin domain profile. 31 152 IPR001480 -
Vra10g1403 828 SMART serkin_6 509 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1403 828 Gene3D Phosphorylase Kinase; domain 1 482 584 - -
Vra10g1403 828 Pfam S-locus glycoprotein domain 216 325 IPR000858 GO:0048544
Vra10g1403 828 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 823 - -
Vra10g1403 828 CDD STKc_IRAK 515 782 - -
Vra10g1403 828 ProSiteProfiles PAN/Apple domain profile. 347 431 IPR003609 -
Vra10g1403 828 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 16 823 - -
Vra10g1403 828 ProSiteProfiles Protein kinase domain profile. 509 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1403 828 SMART blect_4 37 158 IPR001480 -
Vra10g1403 828 CDD PAN_AP_plant 343 431 - -
Vra10g1403 828 Pfam D-mannose binding lectin 79 184 IPR001480 -
Vra10g1403 828 SMART ntp_6 348 430 IPR003609 -
Vra10g1403 828 SUPERFAMILY Protein kinase-like (PK-like) 493 782 IPR011009 -
Vra10g1403 828 PIRSF SRK 7 827 IPR024171 GO:0004674
Vra10g1403 828 Pfam PAN-like domain 347 413 IPR003609 -
Vra10g1403 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Vra10g1403 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 189 IPR036426 -
Vra10g1403 828 Pfam Protein tyrosine and serine/threonine kinase 510 779 IPR001245 GO:0004672|GO:0006468
Vra10g1403 828 Gene3D - 26 155 IPR036426 -
Vra10g1403 828 CDD B_lectin 37 158 IPR001480 -
Vra10g1403 828 ProSiteProfiles EGF-like domain profile. 291 328 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1403 Vra-Chr10 19226359 19229884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1403 447 813 Receptor kinase-like Gene Family AT4G23190 47.283 1.14e-109 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra10g1403 PK_Tyr_Ser-Thr 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1403 - - vra:106774971 1681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1733 7 36030455 36034803 Vra10g1403 10 19226359 19229884 PCT