Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1402 ATGCCAGGTTTAGTATTCTTTCTCTTTTGGTTCTTGGCATCAAACATCACAATTTCATTCTCCTCAGACACCTTAACCCCAACGCAAACTCTTCTAACCAACCAAACCCTGGTGTCACCAAGCCAAGTCTTCGCTCTGGGCTTCTTCTCCGGGACCAATTCCTCTTGGTACTTAGGCATATGGTACAACAACATCAGCAACGGACCCATAGTATGGGTTGCCAACAGAGACAACCCTCTCCACAACTCCACAGGATTTCTAACCATCGGAGAAAACAAAAACATGGTGCTAACAACTCCATCAGGGGAACCCGTTTGGTCCTCCAATATCACCAAAGCCAACAACCCCATTCTTCAGCTCTTGGATACGGGAAATCTAGTTCTCAGAGAAGAAAACGTAACCGACCCCACAAACTATCTCTGGCAAAGCTTCGACTACCCAACAGACACACTCTTACCTGGGATGAAAATGGGGTGGAACCTAGACACTGGCGAGGAGAAACACATAACCTCGTGGAAAAGCGAAGGAAAAGATCCTTCAAGTGGAAATTACTCTTTCAAGATAGATCCTCGTGGGATACCAGAAATTTTCTTGTGGCGTGACGATAACATAATATATAGGAGTGGACCTTGGAACGGCGAGAGATTCAGTGGGGTACCTGAGATGCAACCAGACACTGATTCCATCACGTTTAATTTTTCATACGATAGCCATGGTGTGTACTATTCCTTCTCCATTGGGAACAGTTCTATTCTGTCGAGGCTAGTTGTGACTTCGGGTGCCGATCAACTTCAGCGTCTTACTTGGGTACCAAGCAGCAACACATGGACCAAGTTTTGGTATGCACCTAAGGATCAGTGCGATGATTATAAAGCGTGCGGTTCTTATGGTTTGTGTGACAGCAACGCCTCGCCGGTTTGCACTTGTATGAGAGGGTTCAGTCCGAAGAACCAGCAGGCGTGGAATTTGAGAGACGGATCTGATGGGTGTGTGAGGAACACGAATTTGGATTGTGGGAGTGACAAGTTTTTGCATGTGGAGGACGTGAAGTTGCCAGAGACAAGTAGTGTGTTTGCGAACAGGAGCATGAACCTAGAAGAGTGTAAAGATTGGTGTCGCAGGAATTGTTCTTGCACTGCTTATGCCAACATTGAGGTCACAAACGGAGGAACCGGCTGTGTTACGTGGAGTGGTGAACTCATAGACATGAGGCAGTATGCTTCGGGTGGACAAGATCTCTTTGTCAGAATAGCAGCTTCTGATGCAGAGGACACTGCAGATGGGTCTCACAAGTCAAACCATATCGGCGAGATTATAGGAATTACAATTTCTGCAGTGGTAGTAATTGTGGGACTGGTTGTGATTTACCGGAAGAAGAGGAAAGTGTTAGGTATATCGAATGTGAAGACTACGCCCAGAGGTTCTTTCCAAAGAAGTAGAGAATTGCTGACAAGTGACGGGGTGCTTTCAACTAACAGAGAAAACTCTGGAGAAAGGAACATGGATGACATAGAGTTGCCAATGTTTGATTTTAAAACCTTAGCAATGGCCACAGACAACTTCTCAGAAGCAAATAAACTTGGACAAGGAGGGTTTGGTATTGTTTACAGGGGAAGGCTGATGGAAGGCCGTGATATTGCAGTGAAGAGGTTATCAAAAAACTCATCGCAAGGAGTTGAAGAATTTAAGAATGAAGCCAAGTTAATTGTCAGACTTCAACATCGAAATCTTGTTCGGCTCTTTGGATGCTGCGTTGAGATGGATGAGAAGTTGTTAGTGTATGAGTACATGGAAAACAGAAGCCTTTATTCCATTTTGTTTGACGAAGCTAAAAAACCCATGTTGGACTGGAACAGACGCTACAACATTATATGTGGCACAGCTAGAGGACTACTTTATCTGCACCATGATTCCAGACTCAGGATTATCCATAGGGATCTCAAGGCAAGCAACGTTCTACTTGACAGTGAAATGAACCCAAAGATATCAGACTTTGGGATGGCAAGACTTTTTGGCGCGAATCAGACAGAAGGAAACACACTGAGAGTTGTTGGAACATATGGTTACATGTCTCCTGAATATGCTATGGACGGGACCTTCTCAGTGAAATCTGATGTTTTTAGTTTTGGAGTGCTAGCGCTGGAAATTATAACTGGGAAGAAAAATAGAGGATTCTATTACTCAAACGATGACATGAATCTTCTAGGGCATGCATGGAGACACTGGAGAGATGGCAGTGCATTGGAACTTGTTGATTCATCAATTGGCGATTCGTATTCAGCATCTGAAGTTCTCAGATGCATACACGTTGGACTCTTGTGTGTCCAAGAACGTGCAGAAGATAGGCCAACAATGTCTTCAGTGATGTTGATGCTGAGTAGTGAATCTTCGTTAATGCCACAACCCAGAAACCCTGGATTTTCCTTAGGGAAGAATACTGCAGAGATTGATTCTAGTTCAAGTAAACAAGATGAATCATGGAGTGTGAACCAAGTTACAGTCACATTGCTAGATGCTAGGTAG 2523 0.4423 MPGLVFFLFWFLASNITISFSSDTLTPTQTLLTNQTLVSPSQVFALGFFSGTNSSWYLGIWYNNISNGPIVWVANRDNPLHNSTGFLTIGENKNMVLTTPSGEPVWSSNITKANNPILQLLDTGNLVLREENVTDPTNYLWQSFDYPTDTLLPGMKMGWNLDTGEEKHITSWKSEGKDPSSGNYSFKIDPRGIPEIFLWRDDNIIYRSGPWNGERFSGVPEMQPDTDSITFNFSYDSHGVYYSFSIGNSSILSRLVVTSGADQLQRLTWVPSSNTWTKFWYAPKDQCDDYKACGSYGLCDSNASPVCTCMRGFSPKNQQAWNLRDGSDGCVRNTNLDCGSDKFLHVEDVKLPETSSVFANRSMNLEECKDWCRRNCSCTAYANIEVTNGGTGCVTWSGELIDMRQYASGGQDLFVRIAASDAEDTADGSHKSNHIGEIIGITISAVVVIVGLVVIYRKKRKVLGISNVKTTPRGSFQRSRELLTSDGVLSTNRENSGERNMDDIELPMFDFKTLAMATDNFSEANKLGQGGFGIVYRGRLMEGRDIAVKRLSKNSSQGVEEFKNEAKLIVRLQHRNLVRLFGCCVEMDEKLLVYEYMENRSLYSILFDEAKKPMLDWNRRYNIICGTARGLLYLHHDSRLRIIHRDLKASNVLLDSEMNPKISDFGMARLFGANQTEGNTLRVVGTYGYMSPEYAMDGTFSVKSDVFSFGVLALEIITGKKNRGFYYSNDDMNLLGHAWRHWRDGSALELVDSSIGDSYSASEVLRCIHVGLLCVQERAEDRPTMSSVMLMLSSESSLMPQPRNPGFSLGKNTAEIDSSSSKQDESWSVNQVTVTLLDAR* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1402 840 CDD STKc_IRAK 527 792 - -
Vra10g1402 840 Gene3D - 17 144 IPR036426 -
Vra10g1402 840 ProSiteProfiles Protein kinase domain profile. 521 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1402 840 Pfam Domain of unknown function (DUF3403) 794 840 IPR021820 GO:0004674
Vra10g1402 840 SMART serkin_6 521 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1402 840 ProSitePatterns Protein kinases ATP-binding region signature. 527 549 IPR017441 GO:0005524
Vra10g1402 840 Gene3D Transferase(Phosphotransferase) domain 1 597 801 - -
Vra10g1402 840 ProSiteProfiles Bulb-type lectin domain profile. 22 141 IPR001480 -
Vra10g1402 840 Pfam S-locus glycoprotein domain 206 317 IPR000858 GO:0048544
Vra10g1402 840 SMART ntp_6 338 417 IPR003609 -
Vra10g1402 840 Pfam D-mannose binding lectin 70 173 IPR001480 -
Vra10g1402 840 PIRSF SRK 1 840 IPR024171 GO:0004674
Vra10g1402 840 SUPERFAMILY Protein kinase-like (PK-like) 499 792 IPR011009 -
Vra10g1402 840 ProSiteProfiles PAN/Apple domain profile. 338 418 IPR003609 -
Vra10g1402 840 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 839 - -
Vra10g1402 840 CDD PAN_AP_plant 334 418 - -
Vra10g1402 840 Pfam PAN-like domain 338 403 IPR003609 -
Vra10g1402 840 Gene3D Phosphorylase Kinase; domain 1 495 596 - -
Vra10g1402 840 SMART blect_4 28 147 IPR001480 -
Vra10g1402 840 Pfam Protein tyrosine and serine/threonine kinase 524 789 IPR001245 GO:0004672|GO:0006468
Vra10g1402 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Vra10g1402 840 SUPERFAMILY alpha-D-mannose-specific plant lectins 56 212 IPR036426 -
Vra10g1402 840 CDD B_lectin 34 147 IPR001480 -
Vra10g1402 840 PANTHER - 8 839 - -
Vra10g1402 840 MobiDBLite consensus disorder prediction 797 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1402 Vra-Chr10 19219928 19224838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1402 509 840 Receptor kinase-like Gene Family AT4G11530 59.050 1.71e-135 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra10g1402 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1402 - - gmx:100797331 1412.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1734 7 36039129 36043232 Vra10g1402 10 19219928 19224838 PCT