Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1401 ATGGCGGCGATGTCCATCTCCCTCGTCTTTCTCTTCTCTTTCATCTCTTTCCACCATATGTCTTCTTTGGCGGAAAGTTCAACGATCAGTATCACGCAGGGTGTCTTTATCAGGGACAAGGAGCTTGAGACATTGGTGTCTGAAGAGCTCAACTTCACCTTGGGTTTCTTCAGTTCGGATAACTCCTCTTCCCGCTACGTCGGAATTTGGTACCACAGCATTCCCGCGACACCTGTTATATGGGTCGCAAACGGCGACAAACCCATCAACGGCACAGGAGGATCCATCACTATTGCGAATGACGGCAACCTCGTAGTCCTCGATGGAGCCAAGAACCTTGTGTGGTCTACCCAAGTTTCCATCGATAGCAGCACCAAAAACTGCTCGGCGAAGCTTCGTGAAACTGGTAACCTCGTTCTCTCATGCGAAAGGAAAGACTTGTGGCAAAGCTTTGAGAATCCAACGGATACATTCATGCCTGGTATGAGGGTTCCAGTGGGGGCTTCAAATGGGACGAGTGGTGGCTATGTGTTCACTTCATGGAAATCGTCAACGGATCCTTCGAAGGGAAACTACACTATGGGGGTGGATCCTAAAGGGTTACCTCAGATAGTGGTTTGGGAAGGAGACAAAAGAAGGTGGAGAACGGGGTATTGGGATGGTATAATGTTTGAAGGGGTGTCTATAGCAGGAAATTATCTTCACGGTTTTACGCTTAATGGGGATGGTAAAGGAGGTAGGTATTTCATATATACCCCCGGCACTGATAAGGTGAGGTTTCAAATTGGGTGGGATGGCTATGAGAGAGAGTTCAGGTGGAATGAGGATGAGAAACGTTGGGATGTGGTTCAGAGAGGGCCTTCGCATGAGTGTGAGGTTTACAACAAGTGTGGGAGTTTCGCGGCGTGTGATATGGCCCCTTCGAATTCACCTGTCTGTACTTGCATACGAGGTTTTGAACCGAAGAACAGGGATCAGTGGGATAAGGGGAACTGGTCGGGTGGGTGTACGAGGATGACTCTACTCAAGGCTCAGAGGGAGAATGTAACTTCCGCTGACACTACTCAGGTTAGCGTCGGAGAGGATAAGTTCTTGGAGCTTAGGTCTATGAGGTTGCCGGATTTCGCAAGTGTGGTTGGCACGAATGATTGTCAGAAAGTGTGTTTGAACGATGATTCTTGTACGGCATATGCCAATGTTAATGGAATAGGGTGCATGGTGTGGAATGTCGATTTGGCTGACATTCAACATTATGGTACTGGAGGAAATACACTCAATATCCGTCTCGCTCATTCTGATTTAGATGGAGGTAAAAGGAACATGATTGCGATAATATCTGCTGTTGTGGCGGGGTTAATCTGCCTAGGAATCTTTGTATGGCTGGTGTATAGATTCAAGGGAAAACTTAAAGTTCTGCCTACAGTTTCCTCAGCTTCTTGTTGCAAGAATAGTGATGTACTACCAGTTTATGATGGAAGCAGGAGCAGAGACATGTCAGCAGAATTTTCAGGATCAGCTGATCATAGTTTGGAGGGGAGCCAGCTAAGCGGGCCAGAATTTCCACTTTTCAATTTCAGTTGCATTTCAATAGCCACAAACAATTTCTCAGAAGAAAATAAGCTTGGGAAAGGTGGCTTTGGACCCGTCTACAAGGGAAAGCTTCCAGGCGGAGAACAAATAGCTGTTAAGAGGCTTTCAAGACGGTCTGGTCAAGGCTTAGAGGAGTTCAAGAATGAAATGATGCTGATAGCCAAACTACAGCACCGAAATCTGGTTAGACTAATGGGTTGCTCTATTCAAGGGGAAGAGAAGTTGCTGGTGTATGAATACATGCCAAACAAAAGCTTGGATTGTTTTTTATTTGATCCATTCAAACAAACACAACTAGATTGGAGAAGACGGTTTGAAATCATTGAAGGCATTGCAAGAGGATTGCTCTACCTACACCGAGATTCAAGACTTAGAATAATTCATCGAGATTTAAAAGCGAGTAACATTTTGCTGGATGAAAACATGAACCCAAAGATATCAGACTTTGGATTGGCTAGGATATTTGGTGGAAACCAGAATGAAGCCAATACAAACAGAGTAGTTGGTACATATGGTTATATGGCTCCTGAATATGCAATGGAAGGTCTGCTTTCTGTCAAATCGGATGTATATAGTTTTGGTGTATTACTACTAGAAATTTTGAGTGGCCGCAGAAACACCAGTTTTCGACACTCTGATGACTCCAGCCTCATAGGATATGCGTGGCATCTTTGGAATGAACAGAGAGCAATGGAATTAATCGATCCTTGCATTCGTGATAGTAGTCCTAAAAACAGAGCTTTGAGATGCATACATATAGGGATGTTATGTGTGCAAGATTCAGCAGCTCATAGACCAAACATGTCAGCTGTGGTGTTGATGCTGGAAAGTGAAGCAACAAATCTTCCCACGCCTACGCAACCTTTGATTACTTCCATGAGGAGAACTGAGGACAGACAATTTTACATGGAAGGCCTTGATGTTTCAAATGATTTGACAGTCACAATGGTGGTAGGGAGATAG 2553 0.4477 MAAMSISLVFLFSFISFHHMSSLAESSTISITQGVFIRDKELETLVSEELNFTLGFFSSDNSSSRYVGIWYHSIPATPVIWVANGDKPINGTGGSITIANDGNLVVLDGAKNLVWSTQVSIDSSTKNCSAKLRETGNLVLSCERKDLWQSFENPTDTFMPGMRVPVGASNGTSGGYVFTSWKSSTDPSKGNYTMGVDPKGLPQIVVWEGDKRRWRTGYWDGIMFEGVSIAGNYLHGFTLNGDGKGGRYFIYTPGTDKVRFQIGWDGYEREFRWNEDEKRWDVVQRGPSHECEVYNKCGSFAACDMAPSNSPVCTCIRGFEPKNRDQWDKGNWSGGCTRMTLLKAQRENVTSADTTQVSVGEDKFLELRSMRLPDFASVVGTNDCQKVCLNDDSCTAYANVNGIGCMVWNVDLADIQHYGTGGNTLNIRLAHSDLDGGKRNMIAIISAVVAGLICLGIFVWLVYRFKGKLKVLPTVSSASCCKNSDVLPVYDGSRSRDMSAEFSGSADHSLEGSQLSGPEFPLFNFSCISIATNNFSEENKLGKGGFGPVYKGKLPGGEQIAVKRLSRRSGQGLEEFKNEMMLIAKLQHRNLVRLMGCSIQGEEKLLVYEYMPNKSLDCFLFDPFKQTQLDWRRRFEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFGGNQNEANTNRVVGTYGYMAPEYAMEGLLSVKSDVYSFGVLLLEILSGRRNTSFRHSDDSSLIGYAWHLWNEQRAMELIDPCIRDSSPKNRALRCIHIGMLCVQDSAAHRPNMSAVVLMLESEATNLPTPTQPLITSMRRTEDRQFYMEGLDVSNDLTVTMVVGR* 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1401 850 Gene3D Phosphorylase Kinase; domain 1 511 610 - -
Vra10g1401 850 ProSiteProfiles Protein kinase domain profile. 535 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1401 850 SMART ntp_6 359 429 IPR003609 -
Vra10g1401 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 656 668 IPR008271 GO:0004672|GO:0006468
Vra10g1401 850 ProSiteProfiles EGF-like domain profile. 287 325 IPR000742 -
Vra10g1401 850 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 221 IPR036426 -
Vra10g1401 850 Pfam S-locus glycoprotein domain 214 323 IPR000858 GO:0048544
Vra10g1401 850 SMART serkin_6 535 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1401 850 Gene3D Transferase(Phosphotransferase) domain 1 611 817 - -
Vra10g1401 850 ProSiteProfiles Bulb-type lectin domain profile. 28 153 IPR001480 -
Vra10g1401 850 CDD PAN_AP_plant 361 430 - -
Vra10g1401 850 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 6 850 - -
Vra10g1401 850 CDD STKc_IRAK 541 806 - -
Vra10g1401 850 Pfam D-mannose binding lectin 79 182 IPR001480 -
Vra10g1401 850 CDD B_lectin 43 154 IPR001480 -
Vra10g1401 850 Gene3D - 24 151 IPR036426 -
Vra10g1401 850 PIRSF SRK 1 850 IPR024171 GO:0004674
Vra10g1401 850 ProSiteProfiles PAN/Apple domain profile. 359 430 IPR003609 -
Vra10g1401 850 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 6 850 - -
Vra10g1401 850 Pfam Protein tyrosine and serine/threonine kinase 538 803 IPR001245 GO:0004672|GO:0006468
Vra10g1401 850 SMART blect_4 36 154 IPR001480 -
Vra10g1401 850 Pfam PAN-like domain 360 415 IPR003609 -
Vra10g1401 850 SUPERFAMILY Protein kinase-like (PK-like) 520 832 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1401 Vra-Chr10 19214464 19218415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1401 434 818 Receptor kinase-like Gene Family AT4G23230 52.591 1.33e-131 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra10g1401 PK_Tyr_Ser-Thr 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1401 - - gmx:102660295 1448.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1739 7 36117730 36121799 Vra10g1401 10 19214464 19218415 PCT