Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1400 ATGATACACTGGCAATTGGCACAGGTTATGCGATTCATAAGAAACATGTTACCCGTTTTTGTCATTCTGTTGTCGAACTTGTACATGATTTTTGGAGCTGGCTTAGACACCATTACAGTGTCTCAGTTGATGTCAGACCCTGAAACCGTGACCTCTAATGACGGCGCATTCAAGCTAGGATTCTTCAGCCCTGCAAACACAACAAATCGGTATGTAGGGGTTTGGTATCTCACTGAATCCAATGTCATATGGGTGGCCAACAGAGACCGACCGCTAGAGGATTCTTCAGGGGTTGTCACCATATCCAATGACAGAAACCTTGTAGTACTAAATGGAAAAAAGCAAGTTGTTTGGTCATCAAATGTCTCAAACATTGAGTCCAATTCCACTGTGCAACTTCAAAATACTGGAAACCTTGTCTTGCTGGATAGCCTCACGGGCAAGACAATTTGGGAGAGTTTCAAAGAACCCTCTGACACATTCCTGCCAAATATGATAATTAGCTCCAACCAAGTGACGAGGAAGAAAGACAGAGTGACTTCATGGAAAAACCCTTCTGATCCAGCCGTTGGAATCTTCTCCACCAGCCTCGACCGTCTAAATGTTCCTGAAGTGTTTGTCTGGAATCAAACACAGCCGTATTGGCGTTCGGGTCCTTGGAACGGTCAGGTTTTTATTGGTTTGCCAAGGATGTATACTTCTGCATATCTGAATGGATTCAGTGTAGCACGGGAAGATGATGGAACTGTCAGTATAGCCTATAGTTTGCCAAATCATTCTTTCTTTGGAACCATTGCCTTGAGTTCAGAAGGCAGGCTAGTTTACAGCTCCTGGATGAACAGACGTCAAGTTGGGAAGCGGGTCATTTACTACAGTAACTGTGATATTTATGGCTTCTGCGGCGCTTATGGAAGTTGTGATCCCGATAAGGTGCCAATATGCAGATGTTTGAGAGGTTTTGAGCCGAAAAACCGTGAGGAATGGGATAAGCAAAACTGGACAAGTGGATGTGTGAGAAAGGAAACACTCAGGTGCGAGAGGAGTGAAGCCAGCACAGGAGATGGGTTTGAGAAATTGCAGATGTCTAAGGTGCCAGATTTTGCACTCCAATCATCTGTTTCTGTTGATACATGCAGAACAGAGTGCCTGAATAAATGCTCCTGTACAGCATATGCATATGATGCTGGCATTGGCTGTATGTCTTGGAGGGGCGAGTTAATTGACATTGTAAGGTTCTCAAGTGGAGGACTCGATCTTTACATCCGCCAAGCTCCTTCAGAATTCAAAGGGGGGAGAAACATGACATCAATCATTGTAGTTACAGTGATAGTAGGAGCATTTCTTTTTGCTACTTGTGCATATTTTTTATGGAGATGGACTTCTAAGCGTTCTGCCAGAACGGAAAGATCACCATCATTGGTGCTGAGCATAAGGGAAACCCATCCAGAAAACAGAATTGCAGGTCTGAGTGGAGAGCTGGAACAAGTTAAAATCCAGGACGTGCCAGTATTTAATTTTGAAAACATTGCAACTTCAACAAATCACTTCAATTTAGCTAATAAGCTAGGCGAAGGTGGTTTTGGTTCGGTGTACGAGGGAGAATTAAAAAATGGGCAAAAAGTAGCAGTGAAAAGACTTTCAAGAGCATCTAGGCAGGGGACAGAAGAATTTATAAATGAAGTGACAGTAATTTCAAAACTTCAACACCGTAATCTTGTAAGACTCCTAGGTTGCTGTATTGAAGGAGGGGAGAGGATGTTGATATTTGAGTACATGCCGAATAAGAGTTTGGACTTTTATCTGTTTGATCCAGCCAAAAAGTCAGTTTTAGATTGGCAGAAAAGATTTAATATAATTGAAGGAGTCTCAAGAGGTTTGCTATATCTCCATAGAGATTCTAGACTGAGGATAATACACAGAGACCTGAAGCCAAGTAATATCCTGTTGGATGCAGCACTGAATCCAAAAATATCAGATTTTGGAATGGCCAAAATCTTTGGGGGCAGCGAAGATGAGGCCAATACTAGAAGGGTTGTTGGAACATATGGCTACATGTCTCCTGAATATGCGATGCAAGGACTGTTTTCAGAGAAATCAGATGTGTTTAGTTATGGAGTTTTTCTGTTAGAGATCGTTAGTGGCAGAAAAAATTCAAGTTTTGGAAACCAAGAGGAGTCACTGAGCCTCTTAGGATATGCATGGAAACTATGGAATGAAGGGGAGATTGAATCTCTGATTGATCCAGAAATATTTAATCAAGAGAATGTTGAACAGATATTGAGATGCATACACATTGGACTTCTTTGTGTGCAAGAATTAGCGAAGGAGAGGCCTACTATGGCCACTGTGTTGTCAATGCTAAACAGTGAGATTGTTAATTTTCCTCCTCCGCGACAACCAGCCTTTATCCAAAGACACACCGAGTTACAAGGAGAATCGTCTCACCGGAGTCACGAATCAAATTCCATCAACAGTGTCACTGTAACAAACGTGGATGGCAGATAG 2505 0.4232 MIHWQLAQVMRFIRNMLPVFVILLSNLYMIFGAGLDTITVSQLMSDPETVTSNDGAFKLGFFSPANTTNRYVGVWYLTESNVIWVANRDRPLEDSSGVVTISNDRNLVVLNGKKQVVWSSNVSNIESNSTVQLQNTGNLVLLDSLTGKTIWESFKEPSDTFLPNMIISSNQVTRKKDRVTSWKNPSDPAVGIFSTSLDRLNVPEVFVWNQTQPYWRSGPWNGQVFIGLPRMYTSAYLNGFSVAREDDGTVSIAYSLPNHSFFGTIALSSEGRLVYSSWMNRRQVGKRVIYYSNCDIYGFCGAYGSCDPDKVPICRCLRGFEPKNREEWDKQNWTSGCVRKETLRCERSEASTGDGFEKLQMSKVPDFALQSSVSVDTCRTECLNKCSCTAYAYDAGIGCMSWRGELIDIVRFSSGGLDLYIRQAPSEFKGGRNMTSIIVVTVIVGAFLFATCAYFLWRWTSKRSARTERSPSLVLSIRETHPENRIAGLSGELEQVKIQDVPVFNFENIATSTNHFNLANKLGEGGFGSVYEGELKNGQKVAVKRLSRASRQGTEEFINEVTVISKLQHRNLVRLLGCCIEGGERMLIFEYMPNKSLDFYLFDPAKKSVLDWQKRFNIIEGVSRGLLYLHRDSRLRIIHRDLKPSNILLDAALNPKISDFGMAKIFGGSEDEANTRRVVGTYGYMSPEYAMQGLFSEKSDVFSYGVFLLEIVSGRKNSSFGNQEESLSLLGYAWKLWNEGEIESLIDPEIFNQENVEQILRCIHIGLLCVQELAKERPTMATVLSMLNSEIVNFPPPRQPAFIQRHTELQGESSHRSHESNSINSVTVTNVDGR* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1400 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Vra10g1400 834 SMART serkin_6 516 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1400 834 Gene3D Transferase(Phosphotransferase) domain 1 592 793 - -
Vra10g1400 834 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 29 832 - -
Vra10g1400 834 Gene3D - 33 154 IPR036426 -
Vra10g1400 834 SUPERFAMILY Protein kinase-like (PK-like) 501 826 IPR011009 -
Vra10g1400 834 SMART ntp_6 351 423 IPR003609 -
Vra10g1400 834 PIRSF SRK 7 834 IPR024171 GO:0004674
Vra10g1400 834 CDD STKc_IRAK 522 788 - -
Vra10g1400 834 ProSiteProfiles Bulb-type lectin domain profile. 35 154 IPR001480 -
Vra10g1400 834 CDD B_lectin 41 157 IPR001480 -
Vra10g1400 834 Pfam PAN-like domain 350 409 IPR003609 -
Vra10g1400 834 Pfam D-mannose binding lectin 82 183 IPR001480 -
Vra10g1400 834 MobiDBLite consensus disorder prediction 807 834 - -
Vra10g1400 834 ProSiteProfiles PAN/Apple domain profile. 345 424 IPR003609 -
Vra10g1400 834 Gene3D Phosphorylase Kinase; domain 1 491 591 - -
Vra10g1400 834 Pfam S-locus glycoprotein domain 215 324 IPR000858 GO:0048544
Vra10g1400 834 Pfam Protein tyrosine and serine/threonine kinase 517 786 IPR001245 GO:0004672|GO:0006468
Vra10g1400 834 SMART blect_4 41 157 IPR001480 -
Vra10g1400 834 ProSiteProfiles Protein kinase domain profile. 516 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1400 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 222 IPR036426 -
Vra10g1400 834 Pfam Domain of unknown function (DUF3403) 789 834 IPR021820 GO:0004674
Vra10g1400 834 CDD PAN_AP_plant 342 422 - -
Vra10g1400 834 ProSitePatterns Protein kinases ATP-binding region signature. 522 544 IPR017441 GO:0005524
Vra10g1400 834 MobiDBLite consensus disorder prediction 816 834 - -
Vra10g1400 834 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 29 832 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1400 Vra-Chr10 19206150 19209209 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1400 425 827 Receptor kinase-like Gene Family AT4G05200 49.631 6.98e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra10g1400 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1400 - - gmx:112998788 1350.5