Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1394 ATGAGGAAGTGTGATCTCTGTAACAGTCCGGCAAAGTTGTCGTGTGAATCGGATCAAGCCAGCCTCTGTTGGGAATGCGATGCCAAGGTTCACAGTGCAAACTTCCTCGTCACCAAACATCCCAGGATTCTTCTCTGCCATATTTGTCAGTCGCTCACGGCTTGGCACGGAACTGGACCCAAGTTTGTACCCACCGTCTCCGTTTGCAACACTTGTGTTAACAACAACAGCGAGAGCCGCAGCCGACTGAATCACGATGAAGATGATGATGACCATAATGATGATGACGATGATGATGATGAGATGGATGACCATGTAGAGAACGATGAGGGTGGAGCGGAAGAAGATGATGAAGAAAATCAAGTGGTTCCATGGACATCTACACCACCACCCCCAGCTTCCACTTCTTCAAATAGTGCTGCAACTAGTTCTACCAGGTCCTCTAACGTTGAAGAGGGGATCTCGGATTAA 471 0.4841 MRKCDLCNSPAKLSCESDQASLCWECDAKVHSANFLVTKHPRILLCHICQSLTAWHGTGPKFVPTVSVCNTCVNNNSESRSRLNHDEDDDDHNDDDDDDDEMDDHVENDEGGAEEDDEENQVVPWTSTPPPPASTSSNSAATSSTRSSNVEEGISD* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1394 156 MobiDBLite consensus disorder prediction 76 156 - -
Vra10g1394 156 SMART bboxneu5 1 45 IPR000315 GO:0008270
Vra10g1394 156 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Vra10g1394 156 CDD Bbox1_BBX-like 3 45 - -
Vra10g1394 156 PANTHER B-BOX TYPE ZINC FINGER PROTEIN 1 147 - -
Vra10g1394 156 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 147 - -
Vra10g1394 156 MobiDBLite consensus disorder prediction 132 156 - -
Vra10g1394 156 MobiDBLite consensus disorder prediction 89 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1394 Vra-Chr10 19170607 19171522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1394 2 111 C2C2-CO-like Transcription Factor Family AT4G27310 48.182 7.83e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra10g1394 zf-B_box 9.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1394 - - vun:114188834 209.92