Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1391 ATGGAGTTTGATCTTGAAGATCCACTAGTCAGCTTGGAAGAAGAGCAACCCTTTACTGTATCAGAACTCTTTGCCTCCGAATCAGATCACATGCCCTCACCAAACTACTTAAGTCTAACACATTTTCACGTTTTCTGTTTTGAGGCCATATCTCTTATTCTTCAGGTGAAGTTATGTTTATGTAATAGGTTCATTTCCCCCTCCTTCGTGTCACATTTGCTACATTTTGTTATGTTTCTTCAGGTTCAGCTTTCTTACAAATTAGACCCTTTTGTAGCTTACCTTGCTATAAATTACATGCACCGTTTCATGTCAAGCCAGGAAATTCCGAAGGGGAATCCGTGGTATCTTAGGCTTGTTGTCGTATCGTGTCTCTCTCTTGCTTCAAAGATGAAAAACACAACTTTGCCATTTTTGGAAATGCAGAAAGAAGGTTGTAACTTTAAGGTTCAAAGTATTCACAAAATGGAGCCTCTGATTCTCGGGGCACTGAAATGGCGTATGAGATCAATTACACCTTTTTCTTTCCTGCGCTTCTTCATCTCTTTAGCTGAAATTGAAGACCAATCACTGAAGCAAGCACTCAAAGAGAGAGCTTCTACTATAATCTTCAATGCTCAAAATGACATTAAGCTTTTAGAGTATAAGCCTTCAACTATTGCAGCAACTGCCCTCATCATTGCATCGCATGAACTACTCCCTCATCAATATTGTATTCTGAGAGCTTCAATTATATCCAGTGAGTACCTAGATGAGGAGACATTGTCCAAGTGCTTTGATTTGATGCAAGAGATGATAAGAACGGTAGCAAAAGAGTTAGAGACAGAAAGATGGTTTTTAAGAACAGAAACTCCAGGGAGTGTGCTTGAAAGAAACAACAAACGACAAAGAATTTAA 897 0.3891 MEFDLEDPLVSLEEEQPFTVSELFASESDHMPSPNYLSLTHFHVFCFEAISLILQVKLCLCNRFISPSFVSHLLHFVMFLQVQLSYKLDPFVAYLAINYMHRFMSSQEIPKGNPWYLRLVVVSCLSLASKMKNTTLPFLEMQKEGCNFKVQSIHKMEPLILGALKWRMRSITPFSFLRFFISLAEIEDQSLKQALKERASTIIFNAQNDIKLLEYKPSTIAATALIIASHELLPHQYCILRASIISSEYLDEETLSKCFDLMQEMIRTVAKELETERWFLRTETPGSVLERNNKRQRI* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1391 298 CDD CYCLIN 70 161 IPR013763 -
Vra10g1391 298 Gene3D - 170 259 - -
Vra10g1391 298 PANTHER CYCLINS 78 296 IPR039361 -
Vra10g1391 298 PANTHER CYCLINS 5 70 IPR039361 -
Vra10g1391 298 SMART cyclin_7 77 162 IPR013763 -
Vra10g1391 298 SUPERFAMILY Cyclin-like 23 168 IPR036915 -
Vra10g1391 298 Pfam Cyclin, N-terminal domain 73 168 IPR006671 -
Vra10g1391 298 SUPERFAMILY Cyclin-like 151 275 IPR036915 -
Vra10g1391 298 Gene3D - 80 169 - -
Vra10g1391 298 Pfam Cyclin, C-terminal domain 171 267 IPR004367 -
Vra10g1391 298 SMART Cyclin_C_2 171 286 IPR004367 -
Vra10g1391 298 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 5 70 - -
Vra10g1391 298 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 78 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1391 Vra-Chr10 19155431 19157686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1391 1 291 Core Cell Cycle Gene Families AT4G03270 37.624 2.13e-50 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1391 K18812 - gmx:100799985 413.69