Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1390 ATGGACAACACAACCATGACACCATCTACTATGCCTGATAAATCCATAATTTGTTATACACCATTCATGGTAACAACAAATGGATTGTGGAAGAACAATAATCTTTTAGATTTCTCTCTTCCTCTATTTACCTTGCAATTAACGTTAGTTGTATCTGCAACACGCTTCTTTGTTTTAATCCTCAAGCCCTTTCACCAACCTCGTGTAATTGCTGAAATCTTGGGTGGATTGCTTCTGGGTCCATCAGTGCTTGGAAGAAATAAAAATTTTGCTAATATTGTGTTCCCTATGAAAAGTGTAATGCTGGTGGAGACAATGGCAAACATTGGTCTGATATACTTTGTGTTCTTAATTGGGTTAGAGATGGACGTTTCGATCATCAAACGTGCTGGAAAGAAGACAGTGTTAATTTCCCTTGCTGGTATGGTGATTCCCTTTATGGTTGCTATTTGTTTATCCTCTTTAATAGCTAACACAAACGAAACCATAAATCAAGCCAGTTATATCCTCTATCTTGGTATTGTTCTATCTGTCACTGCATTCCCGGTGCTTGCTCGAATGCTCGTTGAGCTCAAACTTATCAACACAGACTTAGGGAAGCTTGCTCTATCAACTTCTCTCATCAATGATGTGTGTGCATGGATGTTGTTGGCTCTAACTATTGCTTTATCAGAGGAAATAATTAGCGCTTGGGTATCATTGTGGGTTCTGCTATCAAACATTGTTTTTCTTTCTTTCTCCTTTCTTATTGTTAGACCAACAATGTCGTGGTTGATAGAGAAAACTCCAGAGGGAAAACCCTTCAGTGATTTTCAATTATGCATTGTGCTCACTGGTGTATTGATGTCGGCCTTCATCACGGATGTCCTTGGAACACATTGTGTTTTTGGAGCTTTTGTGTATGGCCTAGTTATTCCAAATGGGCCACTTGGAGCTGCAATAATAGAAAAGCTTGAAGACTTTGTTTCAGGACTTTTGCTTCCTCTCTTTTATGCCACCAGTGGGCTTAAGACAGATATCAGCTTAATAAGTGGAGCTAATACTTGGGCTTTTATTCTCTCAGCGATTTCTCTGACTTATCTCGGCAAGATTGCTGGGACTCTCCTTGTTTCAAACATTTTTCAGATACCAAATCGTGATGGAGTTGTTCTTGGTTTACTTATGAACACAAAAGGCATTATTGAAATTATTGTGCTCAATGTTGGGAGGGAACAAAAGATCTTGGATGATAAAATATTTTCAGTCATGATCATTGTAATACTGATAATGACAGCATTCATTTCACCAATTGTAAAAGTAATTTATAGGCCAAGAAAAATGCTTGCACCTTATAGAAGGAGAACAATACAAAGTTCAAGACTTGATGGAGAGTTAAGAGTTCTTGTGGGTATTCACACCCCTCGAAATGTTCCCACTCTAGTTAATCTCCTTGAAGCAACTTATCCCAATAAAAGGTCTCCAATGTGTGCTTATGTGCTCCACTTGGTGGAACTCACTCGTAGAGCTTCTGCAATGCTAATTGTCCATGCCAATAGACAATCAGGAGGTCCAGCCCTCAACAAAACACAAGCACAAACCGACCACATCATCACGGCATTTCAGAACTTTGAGGAACAGGTCAATTATGCTCAAGTCCAACCCTTGACAGCCATTTCCTCTTACTCCACCATGCATGAAGACATATGCAATTTGGCTGAGGAGAAAAGGGTGTCCATCATCATCATTCCTTTCCATAAGCAACAAACAGTAGATGGAGAAATGGAAGATACAATCCCAGCATTAAGAATGGTGAACCACAATCTACTACAAAACTCACCATGCTCAGTTGGTATACTTGTGGATAGGGGATTTAATGGATCCAACCGCTTGATTGGAAATCAAGCATGTCATAAAGTGGCTGTGCTATATTTTGGAGGACCAGATGACAGAGAGGCATTAGCTTATGGATGGAGAATGTCAAGACATCCAAGGGTTCACCTTACTGTCATGCACTTCATTCCAACTGAGTATTCATATCAGAGTTCAGAAACAGATCGCTTATGGGCAAAGATTGATCGAAGTTTCACCACTATAAAAAATGGGGGGGAAAACCAACTGGATAATGAGTATATAAGTGAGTTCAAGAAAATGATTGCACATGATGATTCAGTCATTTACATAGACAAGGTTGTGAACAATGGAGAGGAAACAGTTGCAGCAATAAGATCAATCAATAACGTGAATGACTTGTTTATAGTTGGGAGAGGACAAGGGACAATGTCACCACTAACCGATGGCCTTACGGATTGGAGTGAGTGTCCTGAGTTAGGAGCCATTGGGGATTTACTAGCCTCTTCAGATTTTGAAACAACGGCTTCGGTGTTGGTGATGCATCAATATGTAGGGCAAGGACCAGATGGAGAGGACAATTTTGTAGTTGAAAGACCATGGGAATCAGCTGAATCCCGACATAGCATAAATCAACAACAACAACAACATATGCAAAGATATGTAATGCCAATGGGAACAGGACACTCTTCTGTAATGTTTACGATACCATGA 2541 0.3983 MDNTTMTPSTMPDKSIICYTPFMVTTNGLWKNNNLLDFSLPLFTLQLTLVVSATRFFVLILKPFHQPRVIAEILGGLLLGPSVLGRNKNFANIVFPMKSVMLVETMANIGLIYFVFLIGLEMDVSIIKRAGKKTVLISLAGMVIPFMVAICLSSLIANTNETINQASYILYLGIVLSVTAFPVLARMLVELKLINTDLGKLALSTSLINDVCAWMLLALTIALSEEIISAWVSLWVLLSNIVFLSFSFLIVRPTMSWLIEKTPEGKPFSDFQLCIVLTGVLMSAFITDVLGTHCVFGAFVYGLVIPNGPLGAAIIEKLEDFVSGLLLPLFYATSGLKTDISLISGANTWAFILSAISLTYLGKIAGTLLVSNIFQIPNRDGVVLGLLMNTKGIIEIIVLNVGREQKILDDKIFSVMIIVILIMTAFISPIVKVIYRPRKMLAPYRRRTIQSSRLDGELRVLVGIHTPRNVPTLVNLLEATYPNKRSPMCAYVLHLVELTRRASAMLIVHANRQSGGPALNKTQAQTDHIITAFQNFEEQVNYAQVQPLTAISSYSTMHEDICNLAEEKRVSIIIIPFHKQQTVDGEMEDTIPALRMVNHNLLQNSPCSVGILVDRGFNGSNRLIGNQACHKVAVLYFGGPDDREALAYGWRMSRHPRVHLTVMHFIPTEYSYQSSETDRLWAKIDRSFTTIKNGGENQLDNEYISEFKKMIAHDDSVIYIDKVVNNGEETVAAIRSINNVNDLFIVGRGQGTMSPLTDGLTDWSECPELGAIGDLLASSDFETTASVLVMHQYVGQGPDGEDNFVVERPWESAESRHSINQQQQQHMQRYVMPMGTGHSSVMFTIP* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1390 846 PANTHER CATION/H+ EXCHANGER 3 10 834 - -
Vra10g1390 846 Pfam Sodium/hydrogen exchanger family 50 431 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Vra10g1390 846 Gene3D - 42 440 IPR038770 -
Vra10g1390 846 Gene3D - 485 767 - -
Vra10g1390 846 PANTHER CATION/H + ANTIPORTER 10 834 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1390 Vra-Chr10 19150200 19153094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1390 4 816 Antiporter Super Family AT2G13620 59.902 0.0 990
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1390 - - gmx:100800514 1360.9