Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1387 ATGGGGAAAAAATCGACGCCGGAAGAGGAAGGAAAAGCGGTACCGGAGCATCTGCGGTGCAACCGGTCGGACGGGCGGCAATGGCGGTGCCGCCGGAGAGTGATGGAAAACCTAAAGCTCTGCGAGATTCACTACCTGCAAGGTCAGCATCTGCAGCACAAGGAAAAGGTTCCGGAGTCTCTGAAGCTTCAGAGAAAGAGCCAAAACGACGCCGTTGAGACTCATATTGGGGCGAAGCGGAAGGGCAACTCGAGAGAGGCATTTGTCAATAGGAAGAACCAATTGGAGCTCATAAGGATGGTTCTGCAGAGAGAGGTTGAGAAGAAGAAGAAGAAGGAATCGCAATTGAATTTGCCTTTGAATTTGAATTTGCACTCCAATCACGACTTGAGGAGGGAGTTGCCGAACGGGGTTATGGCTATTGCTTCCGCTTCAACGCCCAATGTGGCTTCTTCTTCTCGTTACTTCAGGTCCAAGAATGTCGAGAGGGGTTCTGGTGGCAAGTTGCAGTGTGAACGAAATTTGAAGAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGCAGTCTTATAAGGTGCTCAAACTGCCAGAGAGAGTTTTTCTGCATGGATTGCATTAAACAAAGGTATTTTGACACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGCCGAGGAACTTGCACCTGTAAAGATTGCTTGGCACCTCAATATGAAGACAGTGAAAGTAAGGAACATTTAGCTGGTAAAAACAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCTGTACTGAAACAAATAAAAGAAGATCACCACGTGGGTGTAGAAACAAAAGCGAAAATTAAAGGGAAGAAAATGAATGATATTATCATCAAACCAGTCAAGTTTGGCTGCAACGAGAAAAATTACTGCAATCATTGCAAAACACCCATTTTGGATCTTCATAAAAGCTGCCTTAGTTGTTCATACAGTCTTTGCTTAAGTTGTTCTCACGCATTAAGTCAAGGAAGAATCTCTGAACAAAACAACTCTTCTATATCCAAGCAACCTGACAGGATAAGTGCTTGCATTTCTGGCGAAAGGTACCTATTGGATGAGAAGACCATTTCTAATGGCAATTTAACTGATACCTCAATGTTAACTGAGTGGACAAGTTGTAATGGTGCTGCCATAGTATCATGCCCACCTACAAAGCTTGGTGATTGTGGTAATAGCCACCTTGATCTGAACTACGTTTTTCCCTTAAGTTGGATCAAAGAAATGGAAGCAAAGGCAGAAGAAATAATTTGCAGCTATGACTTTCCTGAAACTCTGGATAAAAGTTCAAGTTGCCCAATGTGTGTCGACAAAGATCATAAAACTAGCAGATACAAACAGCTACCGGAAGCAGCTCAAAGGGAAGATTCTAATGATAATTACTTATTTTATCCTACAGTTTTGGACATCGGTAGCAATCATTTTGAACACTTTCAGAAACATTGGGGAAAAGGCCATCCTGTAGTAGTGAGAGATGTGCTGCAAAGTACACCAAACCTTAGTTGGGATCCACTGTTCATGTTTTGCACTTATCTTGAGAGGAGCTTGACAAGATATGAGAATAACAAGGACTTACTTGAAGCTTGTTTGGATTGGTTTGAGGTGGAGACTAACGTTAGGCAGTATTTTACCGGGTCTCTTAAATGTCAACCAAAGAAAAATACTTGGCATGAGATGCTGAAACTTAAAGGGTGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCCGAAGTAATTAATGCTCTTCCAATTCAAGAATACATGAATCCCTCGTCAGGTCTTTTGAATTTAGCTGCAAATTTGCCACAGGAGAGTAGAAAGAACGACATAGGACCATATGTTTATATTTCATATGGCTGTTCTGATGATGAAGCCGAGTCCGTGACAAATCTCTGTTATGACTCATATGACATGGTTAACGTTATGGCACATTCCATGGACATCCCTCTGTCCACTGATCAGCTATCTAGAATAAGCAAGTTATTGAAAAAGCACAAAGTTCTATGTCAAACGGTGTCATCTAAAACTACTACTGAGCACGCAGAAGACAGGGAACAAAATGAAATGCAAAGTTTGGTAAGAGAAAGAACTGATTTTTTAAGGAGAGTCAACAGAACATCTTGCACCTCTAGGGAAGCGAAAACAATATGCCATCAGAATTTAGACAACAATATTTCCGGTGATAAAGAATGTGGTTCCTATTCTGAAACTGAAGAGGCACATTGCTCTTTATCTTTCCACAGCATAGTTCTAAGTTCTGAGATGTTTCCAGATCATAATACTAGAAATTCCTTTGAAAACTCAGACAATGATAAAAGGAAGAAGGCTACAGGGAATGCTGGTGCTAAATGGGATGTCTTTCGAAGACAAGACGTGCCAAAGCTCTTAGAATACCTTAAAATACACTCTGATGAATTTTCTTATACTAGTGAACATCACGAGAAGATGGTTCATCCACTTCTAGATCAGAGCTTCTTTCTTGACAATACTCACAAGATGAGACTTAAGGAGGAATTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTTCGTGTGGAATTGGAATTTGTGTCCCCTGAGAATGTTGCTGAGTGTATCCAATTGATTGATGAGGTCCGGCTGCTTCCAGAAGACCACCCCGCAAAAGTAGAAAAACTGGAGGTGAAAAAAATGGCCCTGCAGAGCATGAATACAGCAATAAAAGAAATATGTGAACTTACATGCAGAACATGA 2874 0.4116 MGKKSTPEEEGKAVPEHLRCNRSDGRQWRCRRRVMENLKLCEIHYLQGQHLQHKEKVPESLKLQRKSQNDAVETHIGAKRKGNSREAFVNRKNQLELIRMVLQREVEKKKKKESQLNLPLNLNLHSNHDLRRELPNGVMAIASASTPNVASSSRYFRSKNVERGSGGKLQCERNLKKGRRKKCHWCQRSDSCSLIRCSNCQREFFCMDCIKQRYFDTQNEVKMACPVCRGTCTCKDCLAPQYEDSESKEHLAGKNRVDRILHFHYLVCMLLPVLKQIKEDHHVGVETKAKIKGKKMNDIIIKPVKFGCNEKNYCNHCKTPILDLHKSCLSCSYSLCLSCSHALSQGRISEQNNSSISKQPDRISACISGERYLLDEKTISNGNLTDTSMLTEWTSCNGAAIVSCPPTKLGDCGNSHLDLNYVFPLSWIKEMEAKAEEIICSYDFPETLDKSSSCPMCVDKDHKTSRYKQLPEAAQREDSNDNYLFYPTVLDIGSNHFEHFQKHWGKGHPVVVRDVLQSTPNLSWDPLFMFCTYLERSLTRYENNKDLLEACLDWFEVETNVRQYFTGSLKCQPKKNTWHEMLKLKGWLSSQLFKEQFPAHFAEVINALPIQEYMNPSSGLLNLAANLPQESRKNDIGPYVYISYGCSDDEAESVTNLCYDSYDMVNVMAHSMDIPLSTDQLSRISKLLKKHKVLCQTVSSKTTTEHAEDREQNEMQSLVRERTDFLRRVNRTSCTSREAKTICHQNLDNNISGDKECGSYSETEEAHCSLSFHSIVLSSEMFPDHNTRNSFENSDNDKRKKATGNAGAKWDVFRRQDVPKLLEYLKIHSDEFSYTSEHHEKMVHPLLDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVRVELEFVSPENVAECIQLIDEVRLLPEDHPAKVEKLEVKKMALQSMNTAIKEICELTCRT* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1387 957 SMART cupin_9 597 920 IPR003347 -
Vra10g1387 957 Pfam JmjC domain, hydroxylase 808 903 IPR003347 -
Vra10g1387 957 PANTHER PROTEIN B160 11 956 - -
Vra10g1387 957 SUPERFAMILY Clavaminate synthase-like 496 938 - -
Vra10g1387 957 Coils Coil 92 112 - -
Vra10g1387 957 ProSiteProfiles Zinc finger RING-type profile. 183 229 IPR001841 -
Vra10g1387 957 ProSiteProfiles JmjC domain profile. 616 920 IPR003347 -
Vra10g1387 957 Gene3D Cupin 489 928 - -
Vra10g1387 957 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Vra10g1387 957 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 956 IPR045109 GO:0032454|GO:0033169
Vra10g1387 957 Pfam WRC 15 56 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1387 Vra-Chr10 19122277 19128325 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vra10g1387 JmjC 5e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1387 K15601 - gmx:100799234 1578.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1742 7 36189299 36195517 Vra10g1387 10 19122277 19128325 PCT