Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1385 ATGGGTAGAGCTCCTTGTTGCGAAAAGAATGGCCTCAAGAAAGGACCATGGACCACTGAGGAGGATCAGAAACTCGTTGATTACATTCAGAAACATGGATATGGCAACTGGAGGACACTCCCAAAGAATGCTGGGTTGCAGAGATGTGGAAAGAGTTGCCGTCTTCGTTGGACAAACTATCTCCGACCAGATATAAAGCGCGGTCGGTTTTCGTTTGAGGAGGAAGAGACCATAATTCAGCTACATAGCATTCTTGGCAACAAGTGGTCTGCAATTGCTTCTCGCTTACCGGGAAGAACAGACAATGAAATCAAGAACTATTGGAACACACACATTAGAAAAAGGCTTCTGAGGATGGGAATTGACCCTGTCACACACAGTCCTCGACTTGATCTATTGGACATCTCTTCCATTCTAAACGCATCTTTCTACGGTTCATCACAAATGCTCCTTGGCATGCAGCCTTCTATGGTGAACCCCGAGCTTCTAAGGTTGGCTTCTTCACTCTTCTCCTCCTCACACCAACACAGACACCTTCAAATGTGTGCTCCAAAGGGTCAACAGAACCAGCTTTGCGATCCACAAGTTCAGAATCATGTTCCACACTTGCCACAATTTCAAGATCCAGTTCAAGAGGTGCCTGCATGCAGCACCACCGTGTTCGGCACCCCTTGTGTTTCATTGCCTCTCTCTCAACCACAGTTGGTTGAGCCCCATAATGTGGACCCATATCCATCATCTAGTTTCACAGACTTCACTTACCAACAACATTCCCATGATGATCAGATAATAAGTGATTGGCACAAAGATGGGGTTGCTTTAGGCACTTTAACAGATGACTATGTCCCTCAGTTATCAAGCTATAATTATTATAGTTCTGGTGCTCAAGATCTCGTGTATCCTCCCTTGTCCGAACCTTCAACTTTCCATTCCAATAACAGCAATCAGAACTTAAGCTTCGCTTCAGTTCTATCCACGCCTTCGTCAAGCCCCACACCCTTGAATTCAAACTCCACGATAATCAACGGGAGCAACACAGAAGACGAGAGAGACCAGAGCTATGACAGTAGCAGCATGTTGAAATTTGAAATCCCAGATATTTTAGATGTGAATGAGTTCATGTAA 1125 0.4498 MGRAPCCEKNGLKKGPWTTEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDISSILNASFYGSSQMLLGMQPSMVNPELLRLASSLFSSSHQHRHLQMCAPKGQQNQLCDPQVQNHVPHLPQFQDPVQEVPACSTTVFGTPCVSLPLSQPQLVEPHNVDPYPSSSFTDFTYQQHSHDDQIISDWHKDGVALGTLTDDYVPQLSSYNYYSSGAQDLVYPPLSEPSTFHSNNSNQNLSFASVLSTPSSSPTPLNSNSTIINGSNTEDERDQSYDSSSMLKFEIPDILDVNEFM* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1385 374 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra10g1385 374 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vra10g1385 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra10g1385 374 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra10g1385 374 CDD SANT 69 112 IPR001005 -
Vra10g1385 374 CDD SANT 16 61 IPR001005 -
Vra10g1385 374 MobiDBLite consensus disorder prediction 321 347 - -
Vra10g1385 374 MobiDBLite consensus disorder prediction 321 356 - -
Vra10g1385 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 365 - -
Vra10g1385 374 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra10g1385 374 SMART sant 66 114 IPR001005 -
Vra10g1385 374 SMART sant 13 63 IPR001005 -
Vra10g1385 374 Gene3D - 69 116 - -
Vra10g1385 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra10g1385 374 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra10g1385 374 Gene3D - 13 66 - -
Vra10g1385 374 PANTHER TRANSCRIPTION FACTOR MYB74 1 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1385 Vra-Chr10 19106775 19108457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1385 1 374 MYB Transcription Factor Family AT4G21440 51.786 2.91e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra10g1385 Myb_DNA-binding 9.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1385 K09422 - gmx:778071 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1743 7 36206435 36208184 Vra10g1385 10 19106775 19108457 PCT