Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1381 ATGTCTAGCGTCTCTTTCTTGCAGCGTCTCTCTAGCGCTTTCCGTGAAAAGCAGTCGCGTTTTAAGCTTGTGCTGATTTGCACCGCCGTAAGTGGTGGTGGTCTGTTGGCTTATGGTGAGAGTGTTGCACCTGAGGAGATAATTACCGAGAAGAAAAAAGTGGTGGTTCTGGGAACTGGCTGGGCAGCCACAAGTTTCTTGAAGAATCTCAATAATCCGAAATACGAGGTTCAAGTAGTTTCGCCGCGGAACTACTTTGCTTTCACTCCTTTGCTGCCTAGCGTTACCTGCGGCACAGTTGAAGCGCGCAGCATTGTTGAACCCATCCGCAATATTTTTAAGAAGAAAAAGGTGGATGTACAATTCAGTGAAGCCGAATGTTTCAAGATTGATGCAGAAAATAAGAAAGTTTACTGCCGATCAAGTTTGAACAATAATTTGAATGGAAAAGAAGAATTCGCGGTGGATTATGACTACTTAATAATCGGCGTGGGCGCTAATGTCAACACATTTAATACTCCAGGAGTTATGGAGAATTGCCATTTTTTGAAGGAAGTTGAAGATGCTCAAAAGATTAGAAGAACAGTTATTGACTGCTTCGAGAGAGCAAATTTGCCCGATGTAAGTGAAGATGAGAAGAAGAGAATTCTGCATTTTGCTATTGTTGGAGGTGGACCAACTGGAGTGGAGTTTGCAGCCTCACTTCATGATTTTGTCAATGAGGATTTGGTCCGTTTATATCCTGGGATAAAAGATTTGGTTAAAATTACTCTTCTGGAGGCCGCAGATCATATTTTGGGCATGTTTGACAAGAGAATCACTGCTTTTGCTGAAGACAAGTTTCGAAGAGATGGGATTGATGTGAAAACAGGATCCATGGTTGTTAAGGTATCTGAGAAAGAAATTTCCACCAAAGAACTGAAAAGTGGTGGAGAGATTAAGACAATACCGTATGGAATGGCAGTCTGGTCAACTGGTATCGGCACTCGTCCATTTATTAAAGATTTTATGACTCAAATCGGCCAGGCTAGTAGGCGTGCTCTAGCTACTGACGAATGGTTGAGAGTTGAAGGGTGCAACAATGTCTATGCGCTCGGTGATTGTGCTACGATAAACCAGCGAAAAGTCATGGATGATATTACGGCGATCTTTAAGAAGGCTGACAAAGACAATTCAGGAACACTGACGGTTAAAGAATTTCAAGAGGCCATGAAAGACATCAGTGAAAGATACCCTCAGGTTGAGCTATATCTGAAGAATAAACAGATGCGCAACATTTCCGATTTATTGAAGGATGTCAAGGGGGATGATAAAAAGGATTCAATTGAATTGAATATCGAAGAACTTACAACAGCACTTTCCAAAGTGGATTCTCAAATGAAATTTCTTCCTGCTACAGCCCAGGTTGCATCTCAGCAAGGCACTTACCTAGCCACATGTTTTAACCGCATGGAAGAGTGTGAAAAAAATCCAGAAGGTCCTCTCAGATTCAGGGGAGAAGGTCGCCATCGGTTCAAACCCTTTAGGTACAAGCATTTGGGTCAATTCGCTCCTTTGGGAGGAGAGAAGACAGCAGCTCAGCTTCCTGGAGATTGGGTTTCAATTGGTCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGCAAGCAAGTAAGCTGGCGCACAAAAGCATTGGTAGTTTCAGACTGGACAAGACGTTTTATTTTTGGAAGGGACTCGAGTAGCATATGA 1734 0.4273 MSSVSFLQRLSSAFREKQSRFKLVLICTAVSGGGLLAYGESVAPEEIITEKKKVVVLGTGWAATSFLKNLNNPKYEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIFKKKKVDVQFSEAECFKIDAENKKVYCRSSLNNNLNGKEEFAVDYDYLIIGVGANVNTFNTPGVMENCHFLKEVEDAQKIRRTVIDCFERANLPDVSEDEKKRILHFAIVGGGPTGVEFAASLHDFVNEDLVRLYPGIKDLVKITLLEAADHILGMFDKRITAFAEDKFRRDGIDVKTGSMVVKVSEKEISTKELKSGGEIKTIPYGMAVWSTGIGTRPFIKDFMTQIGQASRRALATDEWLRVEGCNNVYALGDCATINQRKVMDDITAIFKKADKDNSGTLTVKEFQEAMKDISERYPQVELYLKNKQMRNISDLLKDVKGDDKKDSIELNIEELTTALSKVDSQMKFLPATAQVASQQGTYLATCFNRMEECEKNPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEKTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTKALVVSDWTRRFIFGRDSSSI* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1381 577 Coils Coil 439 459 - -
Vra10g1381 577 PANTHER NAD(P)H DEHYDROGENASE B2 4 577 - -
Vra10g1381 577 SMART efh_1 379 407 IPR002048 GO:0005509
Vra10g1381 577 SUPERFAMILY FAD/NAD(P)-binding domain 218 372 IPR036188 -
Vra10g1381 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 377 IPR023753 GO:0016491
Vra10g1381 577 PANTHER NADH DEHYDROGENASE 4 577 IPR045024 GO:0003954|GO:0006116
Vra10g1381 577 SUPERFAMILY FAD/NAD(P)-binding domain 51 270 IPR036188 -
Vra10g1381 577 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Vra10g1381 577 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Vra10g1381 577 Pfam EF hand 380 406 IPR002048 GO:0005509
Vra10g1381 577 Gene3D - 424 576 - -
Vra10g1381 577 Gene3D - 43 423 - -
Vra10g1381 577 SUPERFAMILY EF-hand 368 464 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1381 Vra-Chr10 19071744 19077301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1381 1 577 Chloroplast and Mitochondria Gene Families AT4G21490 72.556 0.0 861
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1381 K03885 - gmx:100797657 1077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1748 7 36369716 36374337 Vra10g1381 10 19071744 19077301 PCT