Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1374 ATGAACAGTAGAGATCAGGCTGCGCAAACCGTTGCGGTTGTGGATTCGTTGGGGTTCAGAGCCGCTATGGCTTCGGCTTCTTCTTCTTCGTCCAAACTGTGTTTCAATTCTGACTGCAAGGAATTGAGGCCCGAAAGACCTAAGAAAGGGTGGAGGCTCCGTAGCGGGGAACTGGCCGAGCTCTGCGATCGATGCGGCTCTGCTTTTGAAGAAGGGAGGTTCTGTGAAATTTTCCACTCAAACGCTTCTGGTTGGAGGAGTTGTGAGACTTGCAGAAAGAGAGTTCATTGTGGATGTATTGTTTCAAGTCATTCCTTCATGTTGCTGGATCCCGGAGGGATTGAATGTTATGCATGTGCCCGCAAAAATATTATTATGCCTTCTAACCTGCCGTGGCCACAATCTTTTTCCCTTCAAAATCGTTTATCTGATAGACTTAGAGATCTATCTGCTAAAGGTTGGAATCAGTTGGCTGGATCAGGTCCTGTACCCTGGAAGCAAGCGCCCAGTCTGTTCAATTCTGCTTCTTCGACCGATCTGATACCAGATGTGCCTTCTTTAGCTGAATTATCCAATAGCTTTGACAAAATGTATTGCAATGAAAGGTTACCTGCCTCAGCCTTGGAAAAGAAAAGCGAGGATTATACTGGATTACCAGTTCATTGGAATGTTACAATTTGCCCACGGGAGATGAAGCTTATGAATGGAATGAGGAATGACGACAAAGCAAGTTCATGTTTAAATATGTGTCAGCAGCCTTCTTCTCTGAAGGAAGAGTCATCAACTCAACCATTTGGTTTGCCGGTGCCTAATTCATGCCAAAATGAAAGAAATGGTCAGCTCGGGGTAACTGGAAGTCACCCTCAACAAACTCCACCACCTCCAGGAAAGCATTTTAATGGCACTATGCATTTAGCACCTGACTCATCAGGTGAGGCTCAGGTTCGCAATGGGCGACCTCGAGCAGATGCCCGAGGAAGAAACCAGTTGTTGCCACGGTACTGGCCTAGGTGTACTGATCTTGAACTACAACAAATATCCATAGATTCAAATTCTGTAATTACTCCCTTGTTTCAGAAAACCTTGAGTGCAAGTGATGCTGGACGAATTGGGCGTTTAGTCCTACCAAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCGCTTAAAATCCTTGATGCAAAGGGAAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTACAGGCTGGTGACACTGTAACATTTAGCCGTTTAGAGCCAGAGGGAAGGTTGGTTATGGGATTTAGAAAGGCTTCGAGTGCTGTGCCATCCGACCAGGACAATGAAACCAATAAGTCTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCTGATCCCAATTCATGGTCTAAAGTTGACAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGCAAATCATTAATATCTAGAAAAAGAAAAAGTGGCATATTGGGCTCAAAGAGTAAACGTCTAAGAATTGAAAATGAGGATTTAATAGAGCTGAAGATTACGTGGCAAGAAGCTCAAGGTCTGCTCCGGCCCCCTCCTAGCCACATTCCGAGCATTGTTGTGATTGAAGGTTTTGAATTTGAGGAATACGAGGAAGCTCCAGTGCTTGGGAAGCCAACAATTTTTACCAGTGATAATGTGGGTGAAAAGATCCAGTGGGCTCAATGCGAAGATTGTCTCAAGTGGCGCAAATTACCAGCAAGTGCGCTTCTTCCATCAAAATGGACGTGTGCTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCAGCTGCACAAGAGCTGACAGCAGAGCAACTTGAGAATTTGCTGCCTCCTTGTAATTCAGCTATTCCCAAGAAAATGAAGGCTGCCAAACAGGATCCTGATAATGCTGAAGCTTTGGAGGGACTCGACACCCTCGCAAATTTAGCTATCCTGGGAGAGGGTGAAGCCCTCCCAGCATCTGCCCAGGCCACAACTAAGCACCCGCGGCATAGACCTGGCTGTTCTTGCATCGTTTGCATTCAACCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGTACGTGTAATGTATGCTTAACAGTGAAGCGACGTTTCCGTACCCTTATGTTACGGCGTGAGAAGAAACAATCAGAAAAAGAAGCAGAGACAACTCGTAAAAAGCAACAGCAACAACATTCTCAACCACTACCTTCGTCTGAAATTTTGCTTGACGAAGATTCATTACCCTGTAGTAACACAGGTGACAGTAGCCCGAACCAGAACAAAGAGGGTAATGATGGTTCTGATGATGATCCTAACAGAATAAAATCATCTGCTTCACCATTCAAAGGCCAAATTGACCTCAATATACAGCCAGAGCGAGAAGAAGAATTGTCCCCTGGTTCAGATTCTGGTGGCATGATGAAGTTGCTCCATGATGCTACTGAGAGGTATCTGAAGCAGCAGACTGTGAACTCCGGTACTGGAGATTCTGCTGGCAGTCAGTCACAGCTGGTAGGAGATGCAATGAGGGAAGATAAACTTAGCAATGGTGTTACCCATGGCAGTAGTAGTCATAGTACTGATAAGGAACATGCTCAATCTTTGTCTATGAATGTGTGA 2709 0.4515 MNSRDQAAQTVAVVDSLGFRAAMASASSSSSKLCFNSDCKELRPERPKKGWRLRSGELAELCDRCGSAFEEGRFCEIFHSNASGWRSCETCRKRVHCGCIVSSHSFMLLDPGGIECYACARKNIIMPSNLPWPQSFSLQNRLSDRLRDLSAKGWNQLAGSGPVPWKQAPSLFNSASSTDLIPDVPSLAELSNSFDKMYCNERLPASALEKKSEDYTGLPVHWNVTICPREMKLMNGMRNDDKASSCLNMCQQPSSLKEESSTQPFGLPVPNSCQNERNGQLGVTGSHPQQTPPPPGKHFNGTMHLAPDSSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAVPSDQDNETNKSGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSGILGSKSKRLRIENEDLIELKITWQEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDNVGEKIQWAQCEDCLKWRKLPASALLPSKWTCADNSWDPERSSCSAAQELTAEQLENLLPPCNSAIPKKMKAAKQDPDNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEKEAETTRKKQQQQHSQPLPSSEILLDEDSLPCSNTGDSSPNQNKEGNDGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPGSDSGGMMKLLHDATERYLKQQTVNSGTGDSAGSQSQLVGDAMREDKLSNGVTHGSSSHSTDKEHAQSLSMNV* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1374 902 MobiDBLite consensus disorder prediction 847 867 - -
Vra10g1374 902 Pfam B3 DNA binding domain 358 457 IPR003340 GO:0003677
Vra10g1374 902 MobiDBLite consensus disorder prediction 254 325 - -
Vra10g1374 902 MobiDBLite consensus disorder prediction 740 756 - -
Vra10g1374 902 Pfam CW-type Zinc Finger 591 633 IPR011124 GO:0008270
Vra10g1374 902 MobiDBLite consensus disorder prediction 879 902 - -
Vra10g1374 902 Gene3D - 590 643 - -
Vra10g1374 902 MobiDBLite consensus disorder prediction 740 902 - -
Vra10g1374 902 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 29 834 - -
Vra10g1374 902 Coils Coil 740 760 - -
Vra10g1374 902 MobiDBLite consensus disorder prediction 254 287 - -
Vra10g1374 902 SUPERFAMILY DNA-binding pseudobarrel domain 355 457 IPR015300 -
Vra10g1374 902 MobiDBLite consensus disorder prediction 461 477 - -
Vra10g1374 902 Gene3D - 336 462 IPR015300 -
Vra10g1374 902 SMART B3_2 358 459 IPR003340 GO:0003677
Vra10g1374 902 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 29 834 - -
Vra10g1374 902 MobiDBLite consensus disorder prediction 757 792 - -
Vra10g1374 902 CDD B3_DNA 356 457 IPR003340 GO:0003677
Vra10g1374 902 ProSiteProfiles B3 DNA-binding domain profile. 358 459 IPR003340 GO:0003677
Vra10g1374 902 ProSiteProfiles Zinc finger CW-type profile. 586 636 IPR011124 GO:0008270
Vra10g1374 902 MobiDBLite consensus disorder prediction 458 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1374 Vra-Chr10 19001962 19013900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1374 289 893 B3 DNA Binding Superfamily AT4G32010 46.580 2.00e-165 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra10g1374 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1374 - - vra:106775753 1803.88