Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1373 ATGAATGACCTATTTTCAAGCTCCTTTAAAAAATACAGTGAAATGAATAATGAGTGTCAAATGAATGACGTGGAGGCTGGAAAGGAAAATGTTAACCTGGATAAGTTCTTTGATGAGGTGGAGAATGTGAAGGAAGATATGAGATCAGTCGAGCAGTTGTATAGAAAATTGCAAGAGTCCAATGAAGAGAGCAAGATCGTCCATAACGCTAAAACCATGAAAGATCTTCGAGCCAAAATGGATCAAGATGTTCAACAGGTTCTCAAACGGGTTAAAATGATAAAGGGCAAGCTTGAAGCTTTGGAACGTTCAAATGCAGCCAATAGAAACCTCCCAGGATGTGGTCCGGGTTCCTCAACAGATCGAACCAGAACCTCAGTGGTCAGTGGCTTAGGGAAGAAACTGAAGGACATGATGGACGATTTTCAAGGGCTGAGAGCAAGAATGCAGAACGAGTACAAGGAAACCGTGGAACGTAGGTACTTCACCATAACAGGAGAGAAGGCTGATGAAGATACCATTGAGAACTTGATATCAAGCGGTGAAAGTGAAAGTTTTCTTCAAAGGGCAATTCAAGAACAGGGTAGAGGTCAGATAATGGACACCATATCAGAGATTCAAGAGAGACATGATTCTGTTAAGGAGATAGAGAAGAACTTGATGGAGTTGCATCAGGTGTTTTTGGACATGGCAGCTCTTGTAGAGTCTCAAGGTCAGCAACTAAACAACATTGAGAGTCATGTCGCACATGCAAGTTCTTTTGTGAGAAGAGGCACAGAACAACTTCATGAAGCCAGAGAGTATCAAAAGAGCTCCAGAGAATGGACTTGTTATGCCATTCTTCTTGGCATTGTTCTTGTCATTGTCCTCTTGTTTCCTCTCTTGACATCACTTTTGCCTCACTTGTTGTATTGA 915 0.4175 MNDLFSSSFKKYSEMNNECQMNDVEAGKENVNLDKFFDEVENVKEDMRSVEQLYRKLQESNEESKIVHNAKTMKDLRAKMDQDVQQVLKRVKMIKGKLEALERSNAANRNLPGCGPGSSTDRTRTSVVSGLGKKLKDMMDDFQGLRARMQNEYKETVERRYFTITGEKADEDTIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDSVKEIEKNLMELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLHEAREYQKSSREWTCYAILLGIVLVIVLLFPLLTSLLPHLLY* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1373 304 Coils Coil 33 63 - -
Vra10g1373 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Vra10g1373 304 SUPERFAMILY t-snare proteins 31 258 IPR010989 GO:0016020|GO:0016192
Vra10g1373 304 SMART tSNARE_6 198 265 IPR000727 -
Vra10g1373 304 PANTHER SYNTAXIN 8 295 IPR045242 -
Vra10g1373 304 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Vra10g1373 304 Coils Coil 84 104 - -
Vra10g1373 304 CDD SynN 33 190 IPR006011 GO:0016020
Vra10g1373 304 Pfam SNARE domain 240 291 IPR000727 -
Vra10g1373 304 SMART SynN_4 28 154 IPR006011 GO:0016020
Vra10g1373 304 MobiDBLite consensus disorder prediction 107 126 - -
Vra10g1373 304 Gene3D - 29 162 - -
Vra10g1373 304 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vra10g1373 304 Gene3D - 194 295 - -
Vra10g1373 304 PANTHER SYNTAXIN-124-RELATED 8 295 - -
Vra10g1373 304 CDD SNARE_syntaxin1-like 202 262 - -
Vra10g1373 304 MobiDBLite consensus disorder prediction 111 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1373 Vra-Chr10 18999679 19001804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1373 1 303 SNARE and Associated Proteins AT1G61290 77.888 4.02e-179 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1373 K08486 - gmx:100818999 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1760 7 36528426 36529577 Vra10g1373 10 18999679 19001804 PCT