Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1359 ATGAAAATGACAAGCACCAAATTGGAGTTGCATGTTGGGATTTTTGTCACCTGCGTCGTGATTCTCGCAGGGACTTTCTGTGTTGGAGATACTGATATGGTTGATGTTGGTGCAATCAATAGTCTATATGTTTCTCTGGGGTCGCCACCACTTCAAGGGTGGAAACCCGTGGGAGGAGATCCATGTTTAGAACTGTGGCAAGGTGTCGCATGTGTCTTCTCCAACATAACTGCTATACACCTTGGAAGCATGAATCTGGGTGGACAGCTGGGCAGCAATTTGAATTTCCCATCCATTTTAGAATTGGATCTTAGTAACAACCACATTGAAGGCCCTATTCCATTTACTCTGCCCCCTACTCTGCGGAGCTTGTCTCTCATGGGAAATCGATTAAATGGAAGCATTCCGGATGCCTTGTCCTTATTAACTCAGCTGTCAAACTTGGATTTGTCAAATAATAACTTGAGTGGTCAGCTGCCTTCCTCAACAGGGAGTTTATCATCTCTTAACACATTGCACTTGCAAAATAATCAACTTTCGGGAACCCTTTACGTGCTGCAAGACCTACCTCTTCAAGACCTGGATATAGAGAACAATTTATTCTCTGGGCCAATTCCTCCAAAATTGTTGTCTATCCCTAATTTCAGTAAAAATGGGAATCCGTTTAATACTACTATCATTCCATCACCTCCTCTTGCAGCCCCTGCACCAGTAGCTATGGTTCCATCCTCTCAAGAATCGCCTTGGAAAGTGGCATATGGTCCTTCTGCCCTAACAGCACGAGTGCCTGCAAGTGCTAGGAGGTCTTTTATGGCTAAGAGCATCATTTGGATTGCTGGTGCAGGTCTTTTTGTATTCATTGTATTGGGAGTTTGTCTTCTAACGTTGTGTTGCATTAAGAGGAGGCCAGAGAAGAAAAATGCTAAGAAACTTGATGATGTGGGCGTGTTTGGGGGATCTTTGAATAAATCTGCATGCAATGATTCTGTTTTTGGAGCAACTAACCAAGAGGAGAAGGGTAAATGTGAAGTACCAAATAGAAGCACAAATTCGATTCCTAAGGTTCAAGATGAAGGAGACATACATGTGAAAGTAGTATCTGCAACTTCAGAATGTAATAATGGTCATCAATCAATGAACACTGGAGGGGCTTCCAAACGTTCACCCCTGCAGCCACCACCAAAACACTCTTTCCCAACCATTTCTGGTGATAAGATCACTATCAGTCCCGCTACAACTACCAAAGAAACTGAAAAACAAGTCATGACAAATTCCATCGAAGTTTATACTATTGCATTGCTTCAACAATATACAAATAACTTTTCCCAAGAAAACTGCATTGGGGAAGGCACACTAGGGCCAGTTTATCGGGCTGAACTCCCTGATGGAAAGCTATTGGCAGTGAGGAAACTGGATGCTACTGCTTCCATGGGGCAGAGTCATGAGCAATTTCTTCAATTGGTATCCAGCATCTCAAATATTCAGCATGCAAATATTGCAAGACTTGTAGGCTACTGTGTTGAACATAGCCAACGACTACTTGTATATGAGTATTGCAGTAATGGGACCCTACATAATGTATTGCATGGGGATGATGATCAGCGAATCAAACTTCCATGGAATGCACGCATTCGAGTGGCCCTCGGAGCTGCCAGAGCTTTAGAGTACCTGCATGAGAACTTTAGGCCACCTATTGTGCATCGAAATTTTAGGTCTAATAATGTTCTTCTGAAGGACAATTTGGAAGTGTGCATCTCTGATTGTGGATTAGGGCCATTGTTATCTTCTGGCTCTACGGGTCAGTTATCAGGACGCCTCCTTACTGCTTACGGTTACAGTGCTCCAGAATTTGAGTCTGGAAGTTACACACAGCAAAGTGATGTCTTCAGTTTTGGTGTTGTAATGTTAGAACTCCTTACTGGACGAAAATCTCATGACAAGTCCCGGCCTCGTGCAGAGCAATTTTTGGTGAGATGGGCTGTCCCTCAACTCCATGACATTGATACATTGTCAAAAATGGTTGACCCCTGCTTGAACGGAGCCTATCCTATGAAGTCCTTGTCGCGTTTTGCAGATATTGTTTCTTCATGTCTACAGCGTGAGCCTGAATTCCGACCTGCAATGTCGGAAATTGTTCAAGATCTCTTGCGAATGATGTGA 2160 0.4338 MKMTSTKLELHVGIFVTCVVILAGTFCVGDTDMVDVGAINSLYVSLGSPPLQGWKPVGGDPCLELWQGVACVFSNITAIHLGSMNLGGQLGSNLNFPSILELDLSNNHIEGPIPFTLPPTLRSLSLMGNRLNGSIPDALSLLTQLSNLDLSNNNLSGQLPSSTGSLSSLNTLHLQNNQLSGTLYVLQDLPLQDLDIENNLFSGPIPPKLLSIPNFSKNGNPFNTTIIPSPPLAAPAPVAMVPSSQESPWKVAYGPSALTARVPASARRSFMAKSIIWIAGAGLFVFIVLGVCLLTLCCIKRRPEKKNAKKLDDVGVFGGSLNKSACNDSVFGATNQEEKGKCEVPNRSTNSIPKVQDEGDIHVKVVSATSECNNGHQSMNTGGASKRSPLQPPPKHSFPTISGDKITISPATTTKETEKQVMTNSIEVYTIALLQQYTNNFSQENCIGEGTLGPVYRAELPDGKLLAVRKLDATASMGQSHEQFLQLVSSISNIQHANIARLVGYCVEHSQRLLVYEYCSNGTLHNVLHGDDDQRIKLPWNARIRVALGAARALEYLHENFRPPIVHRNFRSNNVLLKDNLEVCISDCGLGPLLSSGSTGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSHDKSRPRAEQFLVRWAVPQLHDIDTLSKMVDPCLNGAYPMKSLSRFADIVSSCLQREPEFRPAMSEIVQDLLRMM* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1359 719 MobiDBLite consensus disorder prediction 372 387 - -
Vra10g1359 719 Gene3D Ribonuclease Inhibitor 38 231 IPR032675 -
Vra10g1359 719 SUPERFAMILY Protein kinase-like (PK-like) 420 715 IPR011009 -
Vra10g1359 719 Pfam Protein tyrosine and serine/threonine kinase 444 715 IPR001245 GO:0004672|GO:0006468
Vra10g1359 719 SUPERFAMILY L domain-like 48 213 - -
Vra10g1359 719 Gene3D Transferase(Phosphotransferase) domain 1 519 718 - -
Vra10g1359 719 ProSiteProfiles Protein kinase domain profile. 441 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1359 719 PRINTS Leucine-rich repeat signature 145 158 - -
Vra10g1359 719 PRINTS Leucine-rich repeat signature 166 179 - -
Vra10g1359 719 MobiDBLite consensus disorder prediction 372 418 - -
Vra10g1359 719 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 11 148 - -
Vra10g1359 719 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 142 719 - -
Vra10g1359 719 MobiDBLite consensus disorder prediction 402 418 - -
Vra10g1359 719 PANTHER LEUCINE RICH REPEAT KINASE 2 142 719 - -
Vra10g1359 719 PANTHER LEUCINE RICH REPEAT KINASE 2 11 148 - -
Vra10g1359 719 Gene3D Phosphorylase Kinase; domain 1 404 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1359 Vra-Chr10 18878954 18886022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1359 25 719 Strubbelig Receptor Gene Family AT4G03390 50.268 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vra10g1359 PK_Tyr_Ser-Thr 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1359 - - gmx:100793423 1182.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1773 7 36723187 36730574 Vra10g1359 10 18878954 18886022 PCT