Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1354 ATGATGGCGGATGAGGGATTCGGCTACGCGTGCTTCTTGGACGGTGACGGTAACGCCGCCGATGACGACAAGTTTTGCATCGATCTGGAAACCGTTATGAGCGTTCTCGACGAGGACACCGATCCCTCCGAGAGTAGTCCCGAGGATTTTTCATTGAAAAATATATCACCTGGTGAATCTGGCATCCATGATAATTTTCTACTTCAAAATGGGAATTCTGTGCTTGAATGTGAACATGAAAACCAGGGACCTTCACCACAGACTTTCTCTTCCCCAAATGCTCTTGCTGGCGGTTACATGGACCATGAAGGTGATGATTTTTACTTCACAGAAAGGACAGGAGTTTCCAATTGTGAGATGCCCGCTTACATAGGCACAAGGTTCCCTGATCCTGAGGTGAATTCAACCAATGTAGTTGTATGTGAAGATAGTTTGAAACGGAATATGTGGAAGTGTGGAAATGATAACCCAATCAAGCATGTAGGATATGGTGCAGACTCTGAACCTGCTTCACATGGCTCTATCATTGAGAATATTGATGTAAAATTTGATGATTATGAAACCTATACGCAAGAGATCACTGAACCTTATGGTAAACAGGAAAATGACTCATGTACATCGTTTGAAAGATCGTTTGTTGATGCCGATAGATCGTCTTATGTTGCAACTTCAACTGATTCCTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAGTAACTATTATCCTTCTTTTAATATTTACCAAGGTATGGATGATAGACCTGCTGTTGCCAACGCTTCTGATTGTTTGTTTAATGGTGCTTATTCTCACGTGTGGGAAAATGAAAATGTGACGCGGAACACGAAGGTTAATAAGATGGAGTTATTTACTGATACAAGTGGTGTAGTGCGCTCCATTCTCGGTGGGGGGATATCTTTTCAAGATAATCAATATACGTTCGAAGATAGTAAATATGCATCGTGTTTTCCTGGTAATGTTCTCTTTGAAGACAGTGCACCAGTACAACACTCAACTTGTGCTTCATATATTTCAAGTGCAGGTCAAGAGATGAAACAACAACCTGGAACTTTTCCTGCTGTTGGATCTCAGGGTAATGATTTGTTGAAGTGTGAGGATTGTGTTACATTCACAAGGACCGAGAAAGCCAAATATTATCAAGACGCTATTGGTGGAGCTGCCAATTACTTTCCAGGAATTATGGGAGATTTAAATTTAAAACCATTTGACAAATCTTTGTATAATCTCCAGACGTCAATTGCCAGTGGGAAGCTGTATAATTGTGTTATGACTGAAGGAGAGGGAAAATTAATTGAACATAAAAGTATTGATTCTCAGCTTTCAAAAGGAAGTACCGACAAATCCAATATTGAGGATGAATCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTGTAAGTCGATCAGCAGAGATTGGGAATTCCCTCAACACATTACAATCTTCTAGAGGTGTTTATACTCAGTCTTCTATGGTGGGAGTTATGAGACCTAAGGCACGTGATGAGCAGTACATATTACGAGTTGCATTGCAGGATCTTTCCCAACCAAAATCAGAGGTTAGTCCACCAGATGGACTGCTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACTTCAAGTTTGTACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCGACCATTGCTTTAATATTAAAGGAAAGACCTGCATTGGTGAATAAATGCAACATTGCAAAGAAAAGTGAATTAGAAACTTTGAACCTGGATGCAGATGATGATCAGCTTCCTGAGACTGGCCTAGTGAATAATGAATCTAATATGGTTCAGGATCTGTCTTGTATAAATCCAAACAAAAAAATGAATTTGTCAGTGCATGTAAAAGGAAGGCCGTCTGCTGGAACCCTCGTTGTTTGTCCAACTAGTGTCTTGCGGCAATGGGATGAAGAGTTGCACAGTAAGGTAACTGGCAAAGCAAATCTTTCTGTCCTAGTGTACCATGGTAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGCATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGATGATGAAGAAAAAGGAGCTTATGATGATCCTGCAGTATCAAGCAAGAAAAGGAAATGCCCTTCTAGTTCTAAAAGTAGCAAGAAGGGATTGGACTCTGCGATGCTTGACTCTGTTGCTCGTCCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATCAAGAACCACAGAACTCAGGTTGCAAGGGCTTGTTGGGGTCTTAGGGCAAAGCGGAGATGGTGCTTATCAGGGACTCCCATCCAGAATGCAATTGATGATCTCTATAGCTACTTCAGATTTTTAAGATATGATCCTTATGCCGTGTACACATCATTCTGTTCCACAATTAAGATCCCAATCAGCAAAAGTCCATCGAAAGGATATAGAAAGCTACAAGCTGTCTTAAAAACAATCATGTTACGTCGCACAAAAGGCACACTTCTTGATGGGGAACCTATCATTTCCTTGCCACCTAAATCTGTAGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCTAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAATTATGTTAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCATGCGATCATCCCCTGCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCCTCAGTTGAGATGGCTAAGAAGCTTACTCAGGAAAAGCGATTATCTCTTTTAAATTGTTTGGAAGCTTGTTTGGCCCTCTGCGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTGCGAACATCTTACTAGTGATGACAATCAGTGCCCTACTACAAACTGCAAAATTCGATTAAGCATGTCTTCAGTGTTCTCCAAAGTCACATTGAATAGTTCTTTTTCTGATCAGGCTTGTGATAATTTGCCTGGTTACTCTGGTTGTGAAGTGGATGAATCGGAGTTTTATTCTGAGAGTCAGCCATATAATTCTTCAAAAATTAGGGCTGCACTTGAGGTGTTGCAGTCTTTGTCTAGACCACAATGCTGTGCTCCCCAAAGCAATTCTGTGCATAGCATGCCGGAGGATACTACTGGTGGCCTCGGCAGCTCATCTTGTGACCAAATGAAATCCTCAAATGAATGTCCTGAGAACCAAAATGTGTTAGAGAGAAGCTCTGATGATTCAGTTGGTGGTGAGAAAGCTATAGTGTTTTCTCAGTGGACTAGGATGCTAGATTTACTTGAAGCATGTCTTAAGAATTCTTCAATCCAGTATAGAAGACTTGATGGAACAATGTCTGTCTCGGCAAGGGATAAAGCTGTTAAAGATTTTAACACTCTCCCTGAGGTTTCAGTCATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCCTGCCATGTTCTTATGCTTGATCTTTGGTGGAATCCTACAACTGAAGATCAGGCTATAGACAGAGCGCATCGTATTGGACAGACCCGTCCTGTCACAGTCTTACGGTTAACTGTTAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCATAAAAAGCGAAAAATGGTTGCGTCTGCCTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTCATGATGTGA 3873 0.4131 MMADEGFGYACFLDGDGNAADDDKFCIDLETVMSVLDEDTDPSESSPEDFSLKNISPGESGIHDNFLLQNGNSVLECEHENQGPSPQTFSSPNALAGGYMDHEGDDFYFTERTGVSNCEMPAYIGTRFPDPEVNSTNVVVCEDSLKRNMWKCGNDNPIKHVGYGADSEPASHGSIIENIDVKFDDYETYTQEITEPYGKQENDSCTSFERSFVDADRSSYVATSTDSSICQGSNVPNDFSNYYPSFNIYQGMDDRPAVANASDCLFNGAYSHVWENENVTRNTKVNKMELFTDTSGVVRSILGGGISFQDNQYTFEDSKYASCFPGNVLFEDSAPVQHSTCASYISSAGQEMKQQPGTFPAVGSQGNDLLKCEDCVTFTRTEKAKYYQDAIGGAANYFPGIMGDLNLKPFDKSLYNLQTSIASGKLYNCVMTEGEGKLIEHKSIDSQLSKGSTDKSNIEDESDVCIIEDISHPAPVSRSAEIGNSLNTLQSSRGVYTQSSMVGVMRPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPALVNKCNIAKKSELETLNLDADDDQLPETGLVNNESNMVQDLSCINPNKKMNLSVHVKGRPSAGTLVVCPTSVLRQWDEELHSKVTGKANLSVLVYHGSNRTKDPYELAKHDVVLTTYSIVSMEVPKQPLVDKDDEEKGAYDDPAVSSKKRKCPSSSKSSKKGLDSAMLDSVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISKSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLTQEKRLSLLNCLEACLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTSDDNQCPTTNCKIRLSMSSVFSKVTLNSSFSDQACDNLPGYSGCEVDESEFYSESQPYNSSKIRAALEVLQSLSRPQCCAPQSNSVHSMPEDTTGGLGSSSCDQMKSSNECPENQNVLERSSDDSVGGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVSARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQHKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM* 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1354 1290 SMART ring_2 978 1016 IPR001841 -
Vra10g1354 1290 CDD DEXDc_SHPRH-like 541 862 - -
Vra10g1354 1290 Pfam Helicase conserved C-terminal domain 1131 1232 IPR001650 -
Vra10g1354 1290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 975 1041 IPR013083 -
Vra10g1354 1290 Gene3D - 750 863 IPR038718 -
Vra10g1354 1290 Gene3D - 627 725 IPR038718 -
Vra10g1354 1290 MobiDBLite consensus disorder prediction 1088 1129 - -
Vra10g1354 1290 Gene3D - 510 603 IPR038718 -
Vra10g1354 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 870 1289 IPR027417 -
Vra10g1354 1290 MobiDBLite consensus disorder prediction 717 737 - -
Vra10g1354 1290 ProSiteProfiles Zinc finger RING-type profile. 978 1017 IPR001841 -
Vra10g1354 1290 MobiDBLite consensus disorder prediction 717 752 - -
Vra10g1354 1290 Pfam Zinc finger, C3HC4 type (RING finger) 978 1015 IPR018957 GO:0046872
Vra10g1354 1290 SUPERFAMILY RING/U-box 977 1024 - -
Vra10g1354 1290 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 556 824 IPR014001 -
Vra10g1354 1290 SMART ultradead3 537 839 IPR014001 -
Vra10g1354 1290 CDD SF2_C_SNF 1134 1242 - -
Vra10g1354 1290 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 490 1289 - -
Vra10g1354 1290 Gene3D - 877 1289 IPR027417 -
Vra10g1354 1290 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 490 1289 - -
Vra10g1354 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 526 862 IPR027417 -
Vra10g1354 1290 SMART helicmild6 1149 1232 IPR001650 -
Vra10g1354 1290 MobiDBLite consensus disorder prediction 1088 1130 - -
Vra10g1354 1290 Pfam SNF2-related domain 561 939 IPR000330 GO:0005524|GO:0140658
Vra10g1354 1290 ProSitePatterns Zinc finger RING-type signature. 993 1002 IPR017907 -
Vra10g1354 1290 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1119 1285 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1354 Vra-Chr10 18828208 18837646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1354 431 1289 RAD5 or RAD16-like Gene Family AT1G61140 60.251 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra10g1354 SNF2_N 5e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1354 - - gmx:100805307 1888.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1354 10 18828208 18837646 Vra10g1354 10 18828208 18837646 ECH
Vra7g1776 7 36798104 36806588 Vra10g1354 10 18828208 18837646 PCT