Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1353 ATGGACAATATCATCTACACTTTAGTTTTTATACTTATTCTATCTTTGAAGGCTAGTACTGTTTGTTCTAGAGAGAGACAATGGGGTGGTGTGGGGAGAATGAGGTCTGGGGAGACTAATCTTATGGCTGATCTGGTAACAGACTTGCCTGGCCAACCTCCTGTAGATTTTCAGCACTACGCTGGATACGTCACAGTCAATGAAACAAGTGGAAGAGCACTCTTTTACTGGTTCTACGAGGCCATGACCAAACCTCAAGAAAAACCTTTGGTTCTGTGGCTTAATGGAGGTCCTGGGTGTTCGTCTGTTGGATATGGAGCAACACAGGAAATTGGACCATTTTTAGTGGACACAGATGGCAAAAGCCTTATGTTTAATAACTTCACATGGAACAAAGAGGCCAACATGTTATTCCTGGAATCTCCTGTTGGGGTTGGCTTTTCCTATTCAAATACAACCAGCGAATATGCACAATTGGGAGATGACTTCACAGCTAATGATGCTTACACTTTTCTGCACAATTGGTTCCTCAAATTTCCATTATATAGAACAAGGACATTTTACATAGCTGGAGAAAGCTATGCAGGAAAGTATGTACCGGAGCTGGCTGAACTCATCCAAGACAGAAACAAGGACCCTTCCCTTCACATTGATCTCAAGGGAATTTTGTTGGGCAACCCTGAAACATCTGATGCTGAGGATTGGTCAGGTATGGTTGATTATGCTTGGAGCCATGCAGTGATATCTGATGAAACATACAAAACAATCAAAGCAAGCTGTGACTTCAATAGCAGTGACCCTTGGAGCAACAAAGATTGTAGTCAAGGGGTGGATGAAGTTCTCAAACAGTACAATGAAATTGATATCTACAGCCTCTACACCTCCACATGCTTCGCCAGTACAGCACGTTCAAACGATCGATCCATGCAAATGGTCATGCTTCGCTCATCTAAAATGATGCCACGAATCATGGGTGGTTATGACCCATGTTTGGATGACTATGCTAAAACATTTTACAATAAACCAGATGTTCAGAAGGCTCTGCATGCCAGTGATGGGCAAAATCTCAGGAATTGGAGCATTTGCAATGACAGCATATTCAAGCGCTGGAAACAATCACAGACTTCTGTTATCCCAATCTACAAGAAGCTGATTTCAGCTGGACTTAAGATTTGGATATACAGTGGAGACACTGATGGAAGGGTGCCAGTGCTGTCCACAAGATACAGCTTAAGTATTCTAGATTTGCCTATCACTAAGAAATGGAGACCTTGGTACCATCAAAAGGAGGTAAGTGGGTGGTATCAGGAATACGAGGGGCTAACATTTGCGACATTTCGAGGAGCTGGCCATGCAGTGCCATGTTTCAAACCAAGCAACTCACTCGCATTCTTCTCCTCCTTTCTTAGTGCACAATCACCACCCTCTACTAAATAA 1437 0.4294 MDNIIYTLVFILILSLKASTVCSRERQWGGVGRMRSGETNLMADLVTDLPGQPPVDFQHYAGYVTVNETSGRALFYWFYEAMTKPQEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGKSLMFNNFTWNKEANMLFLESPVGVGFSYSNTTSEYAQLGDDFTANDAYTFLHNWFLKFPLYRTRTFYIAGESYAGKYVPELAELIQDRNKDPSLHIDLKGILLGNPETSDAEDWSGMVDYAWSHAVISDETYKTIKASCDFNSSDPWSNKDCSQGVDEVLKQYNEIDIYSLYTSTCFASTARSNDRSMQMVMLRSSKMMPRIMGGYDPCLDDYAKTFYNKPDVQKALHASDGQNLRNWSICNDSIFKRWKQSQTSVIPIYKKLISAGLKIWIYSGDTDGRVPVLSTRYSLSILDLPITKKWRPWYHQKEVSGWYQEYEGLTFATFRGAGHAVPCFKPSNSLAFFSSFLSAQSPPSTK* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1353 478 Gene3D - 330 366 - -
Vra10g1353 478 Gene3D alpha/beta hydrolase 41 299 IPR029058 -
Vra10g1353 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 138 IPR001563 GO:0004185|GO:0006508
Vra10g1353 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 139 149 IPR001563 GO:0004185|GO:0006508
Vra10g1353 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 175 200 IPR001563 GO:0004185|GO:0006508
Vra10g1353 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 441 454 IPR001563 GO:0004185|GO:0006508
Vra10g1353 478 PANTHER CARBOXYPEPTIDASE 9 473 - -
Vra10g1353 478 Pfam Serine carboxypeptidase 50 470 IPR001563 GO:0004185|GO:0006508
Vra10g1353 478 SUPERFAMILY alpha/beta-Hydrolases 44 472 IPR029058 -
Vra10g1353 478 ProSitePatterns Serine carboxypeptidases, serine active site. 189 196 IPR018202 GO:0004185
Vra10g1353 478 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 9 473 IPR001563 GO:0004185|GO:0006508
Vra10g1353 478 Gene3D - 377 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1353 Vra-Chr10 18819959 18823362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1353 335 472 Calmodulin-binding Proteins AT2G22960 33.094 1.00e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1353 K16297 - gmx:100819700 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1781 7 36850070 36853522 Vra10g1353 10 18819959 18823362 PCT