Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1351 ATGAATAGCATGGCTTCATCTTCAGAATATCACACTCATCAGCACCCTCATCTTCCTCCGGGATTTCGGTTCCACCCCACAGATGAGGAACTGGTGGTTCACTACCTCAAGAGAAAAGCAGACTCTGTTCCTCTTCCTGTCGCCATCATCGCCGAGGTTGATCTCTATAAGTTCGATCCGTGGGAGCTCCCAAGTAAAGCAACGTTTGGCGAGCAAGAGTGGTACTTTTTCAGTCCAAGGGATAGGAAATACCCGAATGGGGCGAGGCCTAACAGGGCTGCTTCTTCTGGGTATTGGAAAGCTACCGGAACTGACAGGCCCATTCTTGCATCTCATGGCCACCACAAAGTTGGAGTCAAGAAAGCACTTGTTTTCTATGGTGGCAAACCTCCAAAAGGGGTTAAAACCAATTGGATCATGCACGAGTACCGGCTTGTTGGCAGTTCCTCAAATTCTTCCTCAAAGCCACCTTCTCTGCCTGCAGATCATGCACGTAGTAGCAAGAAAAACTCCCTGAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAACAACAGTACCATGATGCCAAGGTTTCCTTTGATGGAGCAGAATAAGGAGCTTTCTACGGAGAGCACTATGCTACCAATGATGTCAACTTTGTCAATGGCCAACAATAACACCACTCAGAATTCCAAAGTCGGGACTTCAAGAAGTGCAAGTTATGGAACCATGGGAATGGAAAATGATGACAGCTTCTTTGATGGAATCTTAGGAGTTGACCATAGCATGCAGCAAGATGTTTCTGATTCCCACCAAGTTTCTTCAAAGGGAATCTACCCTGTTAAACGAGCATTCTCGTCACAGTTTTGGAATGACACGAGGTCATCCTCTTCTAGCAGGAGATTCCATTGTGATCTCAATGCTGGAAGCAATACTGTAGAGGAAGAAAGTTCCTTCGTTTCACTGCTTAACCACCTTCCACAGAACACAGCGTTTCACCCAAATGCACTTCTTGGCCCAGTTAGTCATGATGTATTGAGGCAACAGTTTCAGCTTCCAAACATGAACTGGAATGTTTAG 1068 0.4579 MNSMASSSEYHTHQHPHLPPGFRFHPTDEELVVHYLKRKADSVPLPVAIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAASSGYWKATGTDRPILASHGHHKVGVKKALVFYGGKPPKGVKTNWIMHEYRLVGSSSNSSSKPPSLPADHARSSKKNSLRLDDWVLCRIYKKNNSTMMPRFPLMEQNKELSTESTMLPMMSTLSMANNNTTQNSKVGTSRSASYGTMGMENDDSFFDGILGVDHSMQQDVSDSHQVSSKGIYPVKRAFSSQFWNDTRSSSSSRRFHCDLNAGSNTVEEESSFVSLLNHLPQNTAFHPNALLGPVSHDVLRQQFQLPNMNWNV* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1351 355 Gene3D NAC domain 27 190 IPR036093 GO:0003677|GO:0006355
Vra10g1351 355 PANTHER NAC TRANSCRIPTION FACTOR 56 1 329 - -
Vra10g1351 355 PANTHER NAC TRANSCRIPTION FACTOR 56-LIKE 1 329 - -
Vra10g1351 355 MobiDBLite consensus disorder prediction 1 21 - -
Vra10g1351 355 MobiDBLite consensus disorder prediction 148 167 - -
Vra10g1351 355 ProSiteProfiles NAC domain profile. 18 185 IPR003441 GO:0003677|GO:0006355
Vra10g1351 355 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Vra10g1351 355 SUPERFAMILY NAC domain 10 185 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1351 Vra-Chr10 18809466 18811403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1351 15 354 NAC Transcription Factor Family AT1G61110 55.202 9.14e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra10g1351 NAM 2.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1351 - - gmx:100806369 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1783 7 36886763 36888678 Vra10g1351 10 18809466 18811403 PCT