Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1335 ATGCAGATTGCAGAGTATACCAGGACCATTATGACTTGTGGCTGCTTTGGAGCCAAATCTGCTAAGAAAATACGCTCTTCTAATGTTGCTGGCGAGATTGATGGTTATCCCCTTGATAATGTTAGGCAATTTTCTGATACAGAACTGAGATTGGCAACTGATAATTACCACTCAAACAATAAGATAGGACGAGGAGGTTTTGGAACAGTTTACCAGGGAACCTTAAAAGATGGAAGACGTATAGCAGTGAAGACTCTCTCATTTTGGTCAAAGCAGGGAGTTCGTGAATTTTTGACTGAAATTAAAACTTTGTCAAATGTTAAACATCCAAATCTTGTTGAATTGATTGGATTCTGCATCCAAGGACCTAGTCGTACATTAGTCTACGAGTATGTGGAAAATGGCAGCCTTAACAGTGCACTACTTGGCACAAGGAATGAAAACATTAAACTAGACTGGAGAAAAAGATCTGCTATCTGTGTAGGTACTGCTAAGGGTCTTGCTTTTCTTCATGAAGAACTTTCACCACCAATTGTGCACAGAGACATCAAAGCTAGTAATGTACTACTTGACAAAAATTTCAATCCCAAAATAGGTGATTTTGGGCTGGCTAAATTATTTCCAGATGGTATCACTCACGTTAGCACAAGAATTGCTGGAACAACTGGTTACTTAGCACCTGAATATGCAATAGGAGGCCAGTTAACCAAGAAGGCTGATATATACAGCTTTGGAGTTCTTATACTTGAAATAGTTAGTGGCAGAAGCAGTGCCAGGAGGACAAACGGGACAAACGGAGAAGGATCACCCAAATTCCTCTTGGAATGGGCCTGGCAACTTTATGAAGAGGGGAAACTGTTGGAGTTTGTAGATCCAGAAATGGAAGAGTTTCCTGAGGAAGAGGTACTGAGATACATGAAAGTTGCACTTTTCTGTACACAGTCTGCAGCAAGTAGAAGGCCTTTGATGATACAAGTTGTTAATATGCTATCCAAGGCAATCCAACTCAATGAGAAAGAACTTACAGCACCAGGATTATTCACAGATGAAAGAGAATCTTCTAGTAGGAACTCACAACCTGTCCCTTTAATTACCTCTACTCATCTTGCTATTACTCAGGTCACCCCACGATGA 1134 0.4048 MQIAEYTRTIMTCGCFGAKSAKKIRSSNVAGEIDGYPLDNVRQFSDTELRLATDNYHSNNKIGRGGFGTVYQGTLKDGRRIAVKTLSFWSKQGVREFLTEIKTLSNVKHPNLVELIGFCIQGPSRTLVYEYVENGSLNSALLGTRNENIKLDWRKRSAICVGTAKGLAFLHEELSPPIVHRDIKASNVLLDKNFNPKIGDFGLAKLFPDGITHVSTRIAGTTGYLAPEYAIGGQLTKKADIYSFGVLILEIVSGRSSARRTNGTNGEGSPKFLLEWAWQLYEEGKLLEFVDPEMEEFPEEEVLRYMKVALFCTQSAASRRPLMIQVVNMLSKAIQLNEKELTAPGLFTDERESSSRNSQPVPLITSTHLAITQVTPR* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1335 377 CDD STKc_IRAK 62 332 - -
Vra10g1335 377 Pfam Protein kinase domain 56 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1335 377 SUPERFAMILY Protein kinase-like (PK-like) 36 330 IPR011009 -
Vra10g1335 377 ProSitePatterns Protein kinases ATP-binding region signature. 62 84 IPR017441 GO:0005524
Vra10g1335 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Vra10g1335 377 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 358 - -
Vra10g1335 377 Gene3D Phosphorylase Kinase; domain 1 29 131 - -
Vra10g1335 377 ProSiteProfiles Protein kinase domain profile. 56 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1335 377 SMART serkin_6 56 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1335 377 Gene3D Transferase(Phosphotransferase) domain 1 132 348 - -
Vra10g1335 377 PANTHER - 7 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1335 Vra-Chr10 18686254 18689651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1335 44 349 Receptor kinase-like Gene Family AT1G56120 51.634 1.98e-102 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra10g1335 Pkinase 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1335 - - gmx:100809588 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1800 7 37185530 37190664 Vra10g1335 10 18686254 18689651 PCT