Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1330 ATGTACATAGCTTCCATGGGAAGGTCTTTCAAGGACTCTCTGAAACTGCTTGAAGCTGATATTCACCATGCCAATACCCTGGCATCAGATTTTCCAAGGGAATATGACGGTGCATGCCTTCAAATGAGAATGTCATACAGTATGGCAGCACACCTATTTCTCTTTTTGGTACAATGGACAGATTGCAATCTTGCCGGGGCCCTAGGATTGTTAAGAATCCTAATATACAAGGTTTATGTAGATGGGACAACTACCATGTCTACACATGAAAGGAAAGCAAGTATTAGAGAATTCTATGCGGTCATATATCCCTCATTGTTGCAACTGCAAAAAGGTGTAACTGATACAGAGGATAAAAAACAGAAGGCTGTATGCTTGGAGAGGTATCGGAAAAGAGACGAAGATGAGCACAGACAGCCTTCGGATATAGACATTGAAAGGGAAGAGGAATGTGGAATATGCATGGAGATGAACAGTAAGATTGTGTTACCCGACTGCAACCATGTCATGTGCCTGAAATGTTACCACGAATGGAGAACAAGATCACAGTCATGCCCCTTTTGCCGCGACAGTCTGAAGAGAGTAAACTCAGGCGATCTCTGGGTGTTCACTGATGGTAGGGATGTTGTAGACATGGCAACAGTGACAAGAGAGAATCTTAAAAGGCTTTTCATGTACATAGACAAGTTGCCTTTGATCATTCCAGACTCTCTTTTTGACACTTATGACTCTCATCTAAGATGA 744 0.4234 MYIASMGRSFKDSLKLLEADIHHANTLASDFPREYDGACLQMRMSYSMAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAVCLERYRKRDEDEHRQPSDIDIEREEECGICMEMNSKIVLPDCNHVMCLKCYHEWRTRSQSCPFCRDSLKRVNSGDLWVFTDGRDVVDMATVTRENLKRLFMYIDKLPLIIPDSLFDTYDSHLR* 248
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1330 247 PANTHER PEROXISOME BIOGENESIS FACTOR 10-LIKE 4 247 - -
Vra10g1330 247 SMART ring_2 151 188 IPR001841 -
Vra10g1330 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Vra10g1330 247 PANTHER RING FINGER PROTEIN 41, 151 4 247 - -
Vra10g1330 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 213 IPR013083 -
Vra10g1330 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Vra10g1330 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Vra10g1330 247 SUPERFAMILY RING/U-box 145 196 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vra10g1330 Vra-Chr10 18637257 18642232 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1330 151 206 C3H Transcription Factor Family AT5G01960 39.286 1.83e-06 46.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1330 K25840 - gmx:100789769 488.034
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1804 7 37265960 37269369 Vra10g1330 10 18637257 18642232 PCT