Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1319 ATGGCACTTCACCAATACATTGCCGGGGATTTGAAAACCATCGAAGAAGCTGTGACAGAAACAGAAAACTCCAATGGTTGTTTTGACTGTAACATCTGTTTAGACTTTGCACATGATCCAGTGGTGACCCTATGTGGCCACCTCTACTGCTGGCCGTGCATCTACAAGTGGCTTCTCGTCCAACATGATTCTCTTACAACAGCTGAGCGCCCTCAGTGCCCTGTTTGCAAGGCTGTTATATCCAATAGCACAATGGTTCCACTCTATGGCCGTGGCAATTCCACAGCTGAAGGGAAAACATCTTGTGATGTTTTGATACCTCCAAGACCACCAGCTTCATGTGCTCAAGTTCTTGTGGCAGCGCCACCTCGAAGGGGTCAGCGTCTTCCATATCGTAATCCTTACCAAGGTCACTATTTCAGCTCTCGTTCATACCAAGAAGAGGACGCCACTTCTCAAACGCACCCTGTGACTGGAATGTTTGGGGAGATGATTTATTCCAGAGTGTTTGGCAACCCTGAAAATTGGTATGCATACCCCAATTCTTATCAGCTCATGGGAAGTTCTACCACTAGATTGAGAAGGCAAGAGATGCAGGCACACAAATCTTTGAACAGAATCTCTATTTTTCTCTTTTGTTGTTTCCTTATCTGTCTTCTTGTCTTCTAA 669 0.4544 MALHQYIAGDLKTIEEAVTETENSNGCFDCNICLDFAHDPVVTLCGHLYCWPCIYKWLLVQHDSLTTAERPQCPVCKAVISNSTMVPLYGRGNSTAEGKTSCDVLIPPRPPASCAQVLVAAPPRRGQRLPYRNPYQGHYFSSRSYQEEDATSQTHPVTGMFGEMIYSRVFGNPENWYAYPNSYQLMGSSTTRLRRQEMQAHKSLNRISIFLFCCFLICLLVF* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1319 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 222 - -
Vra10g1319 222 SMART ring_2 30 76 IPR001841 -
Vra10g1319 222 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Vra10g1319 222 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Vra10g1319 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 104 IPR013083 -
Vra10g1319 222 CDD RING-HC_AtRMA_like 28 78 - -
Vra10g1319 222 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Vra10g1319 222 SUPERFAMILY RING/U-box 26 89 - -
Vra10g1319 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 222 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1319 Vra-Chr10 18563585 18565589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1319 6 208 C3H Transcription Factor Family AT4G27470 40.541 9.24e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1319 K10666 - gmx:100816864 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1811 7 37338809 37341048 Vra10g1319 10 18563585 18565589 PCT