Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1311 ATGCTAAAAAACATGATCAGACACAAGCTGAAACACGCACACCCTCTTGCACCACTTCTAATGATTCTTCTCTTTTTCAACTCCACATGTGCCATTGATTTCGTCTTCAACGGCTTCAACTCCTCTGAAGTATTGCTTTTTGGAAACGCCACCATCGATTCTCGAATTCTAACACTTACACATCATCAAACTTTCTCCATCGGTCGTGCCTTGTACAAGGAAAAAATTCCCACCAAGAAACCAAACTCTTCTTTTGTCTACCCTTTCTCCACCTCTTTCATCTTTGCCATGGCACCTTATGAAGACACTCTTCCGGGGCATGGCTTGGTTTTCATCTTTACACCTGTCACGGGCATCCAAGGCACAAGTTCTGCACAACACCTTGGTCTGTTCAACCTCACCAACAACGGAAACTCAAGCAACCATGTGCTTGGTGTTGAGTTCGATGTGTTCATGAACCAAGAGTTCGATGACATCAACGCCAATCATGTGGGGATTGACATAAACTCTCTCAAGTCTTCTGTTTCCAATGATTCTGGATATTGGCAAGATGACGGTGACAAGTCCTTTAAGGAATTGACGCTTAACAGCGGTGAGAATTACCAAGTTTGGATTGACTACGAAGATTCTAGGATGAATGTTACCATGGCACCGGTGGGTAGGAAAAGGCCCAGTAGGCCTTTGTTGAATGTTTCTCTCAATTTATCTCAGGTTTTTGAGGATGAAATGTTTGTTGGGTTTACTAGTGCCACTGGTCAATTAGTTGAGAGTCACAAGATTTTGGGGTGGAGTTTCAGCAATGAGAATATTTCGTTGAGTGATGAACTTATTACTACCGGACTACCGTCTTTTGTTCTTCCAAAGGACTCAATTTTTAAGTCCAAGGGGTTTGTTGCAGGTTTTACTGTCGGAGCTTTCTTAGTTATTTGTGTCTTGATTTTGTTGGCACTGGTTTTGATCGAGAGGAAGCGTTTGAGAGAAAGAAAGAGGCAGGAAATGGAAGATTGGGAGTTGGAGTTTTGGCCACACAGAATGGCGTATGAGGAAATTGAGGCAGCAACAAAGGGGTTCTCTGAAGAGAATGTGATTGGGGTTGGTGGGAATGGGAAAGTCTACAAGGGTGTTCTAAGAGGAGGGGTGGAGATTGCTGTGAAGCGCATTTCTCATGAAAATGATGGCCTGCGAGAATTTCTTGCTGAAGTTTCAAGCCTTGGGAGACTGAAGCAAAGGAATTTGGTGGGATTGAGAGGTTGGTGCAAGAAAGATGTTGGGAGTTTCTTGTTAGTCTACGACTACATGGAAAATGGTAGCTTGGACAAGAGGGTGTTTGATTGTGATGAGAGGAAGATGTTGAGTTATGAGGATAGGATAAGGATTATCAAAGATGTGGCTTTTGCAGTTTTGTACTTGCACGAGGGGTGGGAAGCTAAGGTTCTTCATAGGGACATCAAGGCCAGCAATGTTTTGCTTGATAAGGATATGAATGGAAGGCTTGGGGATTTTGGGTTAGCCAGAATGCACAGCCATGGTCAAGTTGCTAGCACCACAAAATTGGTTGGAACAGTGGGGTACATGGCTCCCGAAGTGTTCAAGACTGGAAGAGCTTCCACTCAGACAGATGTTTACATGTTTGGCATCTTGATTTTAGAAGTTTTGTGTGGAAGGAGACCTCTAGAAGAAGGTAAGTCACCTTTGGTGGAGTGGGTTTGGCAACTAATGGTACAAGGGCAACTTGTTTTTGCACTTGATGAAAGATTAAGGACTAAGGGAGAGTTCAGTGAGCAAGAAGTGGAGAGGTTAATGCACTTGGGTTTGCTGTGTGCCTACCCTGAACCAAAGGTCAGGCCCACAATGAGACAAGTGATGAATGTTCTGGAGGGGAAGAACGATGAAGATGATTCAGAAATTGAGAATATGGGTAGTTATTTGCTCCAACAATTGAAATCAAGGGATATATTGTCTGAGTATTCCCAATACTTTAATTATGCCTCACACCCAACTTTTCAAGATATTGGTAACTCTTCCTCAATGTCTCTCACTTGGTCCGAATCTGTAGTTGAGGGTAGGTGA 2070 0.4333 MLKNMIRHKLKHAHPLAPLLMILLFFNSTCAIDFVFNGFNSSEVLLFGNATIDSRILTLTHHQTFSIGRALYKEKIPTKKPNSSFVYPFSTSFIFAMAPYEDTLPGHGLVFIFTPVTGIQGTSSAQHLGLFNLTNNGNSSNHVLGVEFDVFMNQEFDDINANHVGIDINSLKSSVSNDSGYWQDDGDKSFKELTLNSGENYQVWIDYEDSRMNVTMAPVGRKRPSRPLLNVSLNLSQVFEDEMFVGFTSATGQLVESHKILGWSFSNENISLSDELITTGLPSFVLPKDSIFKSKGFVAGFTVGAFLVICVLILLALVLIERKRLRERKRQEMEDWELEFWPHRMAYEEIEAATKGFSEENVIGVGGNGKVYKGVLRGGVEIAVKRISHENDGLREFLAEVSSLGRLKQRNLVGLRGWCKKDVGSFLLVYDYMENGSLDKRVFDCDERKMLSYEDRIRIIKDVAFAVLYLHEGWEAKVLHRDIKASNVLLDKDMNGRLGDFGLARMHSHGQVASTTKLVGTVGYMAPEVFKTGRASTQTDVYMFGILILEVLCGRRPLEEGKSPLVEWVWQLMVQGQLVFALDERLRTKGEFSEQEVERLMHLGLLCAYPEPKVRPTMRQVMNVLEGKNDEDDSEIENMGSYLLQQLKSRDILSEYSQYFNYASHPTFQDIGNSSSMSLTWSESVVEGR* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1311 689 Pfam Legume lectin domain 32 270 IPR001220 GO:0030246
Vra10g1311 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Vra10g1311 689 Gene3D Phosphorylase Kinase; domain 1 318 432 - -
Vra10g1311 689 PANTHER - 18 681 - -
Vra10g1311 689 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 274 IPR013320 -
Vra10g1311 689 Pfam Protein kinase domain 358 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1311 689 CDD lectin_legume_LecRK_Arcelin_ConA 32 266 IPR001220 GO:0030246
Vra10g1311 689 SMART serkin_6 357 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1311 689 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Vra10g1311 689 Gene3D - 30 276 - -
Vra10g1311 689 SUPERFAMILY Protein kinase-like (PK-like) 333 628 IPR011009 -
Vra10g1311 689 ProSiteProfiles Protein kinase domain profile. 357 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1311 689 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 18 681 - -
Vra10g1311 689 Gene3D Transferase(Phosphotransferase) domain 1 433 647 - -
Vra10g1311 689 CDD STKc_IRAK 363 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1311 Vra-Chr10 18487979 18490608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1311 27 573 Receptor kinase-like Gene Family AT4G04960 69.022 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra10g1311 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1311 - - gmx:100804391 1202.19