Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1308 ATGGGCGAAGATAGTAATTCTTGGATTAGGAGGACAAAGTTTTCACACACGGTGTGCCATCGTTTGGATCCATCTAGATTAGGTCATGTTCCCATCGGCATTCAGTCAGAGCAGAAATCAAGCCCTGCCTCAGAGGTTCAGAGGCACCCCATAACGAACAAGCAGAGATCTTCGTCACCATTGCCTGTGACTTTTCTTTCTGAGGCCTTCAGGGAAGCTAGACATGATCAGAAGAGGTTCTCCACACCGAATCCCCAGAGAGATAATAGGATTACGGGGAAGGAGTTGAACAAGGATTCTCCGGAGACTAAGGAATCAAGTTCAAAGTTTCCTTCCCGTAGTCCAAGTAAGAAGGTGAAGTCAAAGCACAGCAAGGATGCAGCATGGACCAAGTTTTTGGATAATGGTGGAAGCAAGATTACTGCTGTCGAAACGGCTGAAGAATGGAATATTGACATGTCTCAGCTGTTTTTTGGCCTAAAGTTTGCTCATGGAGCACATAGCCGACTTTACCATGGTGTATATAAGGACGAATCAGTAGCAGTTAAACTCATTATGGAACCCGAAGACGATGAAAGTGGAGATTTGGCTTCTCGATTAGAAAAACAGTTCGTTAGAGAAGTTACCCTCTTATCTCGTCTTCACCATCAAAACGTTATAAAGTTCTCAGCAGCGTGCAGAAAGCCACCTGTTTATTGTATCATAACAGAATATCTTTCGGAAGGTTCCTTGAGGGCATATTTGCATAAGTTGGAGCACCAAACTATTTCTCTGCAAAAGCTTTTAACTTTTGCCCTTGATATTGCTCGGGGTATGGAATATATACATTCTCAAGGTGTGATTCATCGAGACCTTAAGCCAGAGAATATCCTCATAGGCGAAGGTTGTCGCCTTAAAATTGCTGATTTTGGCATTGCATGCGAGGAAGCCTCTTGTGACATACTGGCCGATGACCCAGGCACCTACCGTTGGATGGCACCCGAGATGATCAAACGTAAATCCTACGGGAGAAAGGTTGATGTCTACAGTTTTGGGCTTATCTTATCGGAGATGTTGACTGGAACTATTCCATATGAGGATATGAATCCAATACAAGCTGCTTTTGCCGTTGTAAACAAGAATTCAAGGCCAGTTATTCCATCAGACTGTCCACCTGCAATGAGAGCTTTGGTTGAGCAGTGTTGGAGCTCGCAACCAGATAAGAGGCCTGAGTTCTGGCAGATTGTGAAGATATTAGAGCAATTTCAATCTTCACTTGTCCGTGATGGAACCCTTACTCTGCTGCCAAACCCTTGTTGGGATAATAAAAAAGGGCTTCTTCATTGGATTCAAAAGCTTGGCCCTGTGCATCAAAATAGTGGCCCTGTGCCTAAACCAAAGTTCACATGA 1389 0.4406 MGEDSNSWIRRTKFSHTVCHRLDPSRLGHVPIGIQSEQKSSPASEVQRHPITNKQRSSSPLPVTFLSEAFREARHDQKRFSTPNPQRDNRITGKELNKDSPETKESSSKFPSRSPSKKVKSKHSKDAAWTKFLDNGGSKITAVETAEEWNIDMSQLFFGLKFAHGAHSRLYHGVYKDESVAVKLIMEPEDDESGDLASRLEKQFVREVTLLSRLHHQNVIKFSAACRKPPVYCIITEYLSEGSLRAYLHKLEHQTISLQKLLTFALDIARGMEYIHSQGVIHRDLKPENILIGEGCRLKIADFGIACEEASCDILADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILSEMLTGTIPYEDMNPIQAAFAVVNKNSRPVIPSDCPPAMRALVEQCWSSQPDKRPEFWQIVKILEQFQSSLVRDGTLTLLPNPCWDNKKGLLHWIQKLGPVHQNSGPVPKPKFT* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1308 462 Gene3D Phosphorylase Kinase; domain 1 144 240 - -
Vra10g1308 462 MobiDBLite consensus disorder prediction 36 125 - -
Vra10g1308 462 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 439 - -
Vra10g1308 462 CDD STKc_MAP3K-like 163 412 - -
Vra10g1308 462 Pfam Protein tyrosine and serine/threonine kinase 161 412 IPR001245 GO:0004672|GO:0006468
Vra10g1308 462 SUPERFAMILY Protein kinase-like (PK-like) 141 412 IPR011009 -
Vra10g1308 462 ProSiteProfiles Protein kinase domain profile. 156 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1308 462 PRINTS Tyrosine kinase catalytic domain signature 236 249 IPR001245 GO:0004672|GO:0006468
Vra10g1308 462 PRINTS Tyrosine kinase catalytic domain signature 274 292 IPR001245 GO:0004672|GO:0006468
Vra10g1308 462 PRINTS Tyrosine kinase catalytic domain signature 320 330 IPR001245 GO:0004672|GO:0006468
Vra10g1308 462 PRINTS Tyrosine kinase catalytic domain signature 339 361 IPR001245 GO:0004672|GO:0006468
Vra10g1308 462 PRINTS Tyrosine kinase catalytic domain signature 383 405 IPR001245 GO:0004672|GO:0006468
Vra10g1308 462 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 439 - -
Vra10g1308 462 SMART serkin_6 156 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1308 462 MobiDBLite consensus disorder prediction 69 83 - -
Vra10g1308 462 Gene3D Transferase(Phosphotransferase) domain 1 241 425 - -
Vra10g1308 462 MobiDBLite consensus disorder prediction 36 64 - -
Vra10g1308 462 MobiDBLite consensus disorder prediction 91 106 - -
Vra10g1308 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1308 Vra-Chr10 18464302 18467052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1308 1 462 MAP Kinase Kinase Kinase AT5G58950 54.373 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vra10g1308 PK_Tyr_Ser-Thr 2.7e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1308 - - gmx:100500590 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1821 7 37457228 37461725 Vra10g1308 10 18464302 18467052 PCT