Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1307 ATGGAGAACAACCCTAGTCCATCTCGACTTGATAGAAAATTCATTGAGAGGAACAGAAGAAATCAAATGAAGACTCTCTTCCGCAAACTCAACTCACTTGTGCCTCATCAAACATCAAAGGCGGTTTCACTGCCGGATCAGCTAGAAGAAGCAACAAACTACATAAAGAAATTACAGATGAATATGGAGAAAATGGAGAAGAAGAAGAACAAGCTACTAGGAATAGAAAGAGCAAATGTGAGCATGAATGGAAGAGGAGAGAGAGTAGGGTTTAAATCTCCACGGATTGAGATCCAACAGATGGGTTCAACCTTAGAGGTTGTTCTAATAACTGGGTTGGATTCTCAGTTCATGTTCAGTGAAACCATTCGTGTTCTTCATGAAGAAGGATTAGATGTTGTTAACGCCAGTTATAATGTTATCGAAGATGCAGTTTTCCATTCAATACACTGTCATCAGGACGAGAAATTTGCCAACGGAGCTGCCAGGATATCTGAGAGGCTAAAGAACTTCATCTACGAGTCTAGCTACTGTGCTTTTTAA 543 0.4015 MENNPSPSRLDRKFIERNRRNQMKTLFRKLNSLVPHQTSKAVSLPDQLEEATNYIKKLQMNMEKMEKKKNKLLGIERANVSMNGRGERVGFKSPRIEIQQMGSTLEVVLITGLDSQFMFSETIRVLHEEGLDVVNASYNVIEDAVFHSIHCHQDEKFANGAARISERLKNFIYESSYCAF* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1307 180 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 58 IPR011598 GO:0046983
Vra10g1307 180 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 8 72 IPR036638 GO:0046983
Vra10g1307 180 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 173 IPR015660 GO:0003700|GO:0006357
Vra10g1307 180 Coils Coil 48 75 - -
Vra10g1307 180 Pfam Helix-loop-helix DNA-binding domain 12 59 IPR011598 GO:0046983
Vra10g1307 180 Gene3D - 1 85 IPR036638 GO:0046983
Vra10g1307 180 PANTHER TRANSCRIPTION FACTOR BHLH162 1 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1307 Vra-Chr10 18455032 18456325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1307 10 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 42.775 1.60e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra10g1307 HLH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1307 - - gmx:100784418 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1822 7 37475427 37476780 Vra10g1307 10 18455032 18456325 PCT