Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1303 ATGAAGTTCAACATTGCGAATCCGACCACCGGTTGTCAGAAGAAGTTGGAGATTGATGACGACCAGAAGCTACGAGCATTTTGGGACAAGAGGATCTCTCAAGAGGTTCTTGGTGATGCTTTGGGCGAGGAATTCAAAGGCTATGTGTTCAAAATCACCGGAGGTTGTGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGCCGTGTTCGTCTCCTGCTGCACAGAGGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGAAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTCTGAATTTGGTAATTGTAAAGAAGGGTGAAAGTGATTTACCAGGCCTGACCGACGTTGAAAAGCCAAGGATGAGGGGCCCAAAGAGAGCTTCCAAAATTCGCAAGCTGTTCAACCTGTCTAAGGATGATGATGTGAGGAAGTATGTCAACACATATAGGAGAACTTTTACAACTAAAGCTGGGAAAAAGGTGAGCAAGGCTCCTAAAATCCAACGCCTGGTCACTCCCCTGACCCTCCAAAGAAAGAGAGCAAGGATCGCAGATAAGAAAAAGAGAATTGCCAAAGCAAAATCAGAGGCAGCGGAGTACCAGAAACTTCTCGCCTCCAGATTGAAGGAGCAGAGAGAACGTCGGAGTGAGAGCTTGGCTAAGAGAAGATCAAGACTTTCCAGTGCTACTAAACAAGCTGCCACAGCATAA 750 0.476 MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGESDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSRLSSATKQAATA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1303 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Vra10g1303 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vra10g1303 249 Coils Coil 189 216 - -
Vra10g1303 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vra10g1303 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 248 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vra10g1303 249 MobiDBLite consensus disorder prediction 219 237 - -
Vra10g1303 249 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
Vra10g1303 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 248 - -
Vra10g1303 249 MobiDBLite consensus disorder prediction 219 249 - -
Vra10g1303 249 Gene3D - 133 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1303 Vra-Chr10 18418342 18420589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1303 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 71.888 3.79e-120 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1303 K02991 - gmx:100800507 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1829 7 37611589 37613981 Vra10g1303 10 18418342 18420589 PCT