Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1299 ATGGATGAAAGTTGGAGTGAGGGGAAAAGGAGAATGAATTACAAGGAGGAAGAAGATGATGATTATGAGGAGGAGGAAGAGGAGGAGGGAAGTGAGTACGGAGAGGACGGTAGGAAGAAGAGGGTGGTGACTAACAAGAGAGGCTCCAAAGCTGGAGGCTCAATGCCACCTTCATGTCAAGTTGATGGTTGTAATGCTGATCTCAGTGATGCTAAGCCCTACCACAGGCGTCACAAGGTTTGTGAGTACCATGCCAAGGCTCCTGCAGTGCTCATTGCAGAGCAGCATCAACGGTTTTGCCAACAATGCAGTAGGTTTCATGAGCTATCAGAATTTGATGAATCAAAAAGGAGTTGTAGAAGGCGTTTGGCTGGACATAATGAAAGGCGTCGCAAGAATGCATCTGAATATGGGCATTGA 420 0.469 MDESWSEGKRRMNYKEEEDDDYEEEEEEEGSEYGEDGRKKRVVTNKRGSKAGGSMPPSCQVDGCNADLSDAKPYHRRHKVCEYHAKAPAVLIAEQHQRFCQQCSRFHELSEFDESKRSCRRRLAGHNERRRKNASEYGH* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1299 139 PIRSF SBP 5 139 IPR017238 GO:0003677|GO:0003700|GO:0009908
Vra10g1299 139 MobiDBLite consensus disorder prediction 1 63 - -
Vra10g1299 139 Pfam SBP domain 59 132 IPR004333 GO:0003677
Vra10g1299 139 ProSiteProfiles Zinc finger SBP-type profile. 56 133 IPR004333 GO:0003677
Vra10g1299 139 MobiDBLite consensus disorder prediction 114 139 - -
Vra10g1299 139 MobiDBLite consensus disorder prediction 1 17 - -
Vra10g1299 139 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 134 IPR044817 GO:0003677
Vra10g1299 139 Gene3D - 49 120 IPR036893 GO:0003677|GO:0005634
Vra10g1299 139 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 15 134 - -
Vra10g1299 139 MobiDBLite consensus disorder prediction 18 32 - -
Vra10g1299 139 SUPERFAMILY SBT domain 57 136 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1299 Vra-Chr10 18374952 18376934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1299 59 136 SBP-box Gene Family AT2G33810 74.359 1.53e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra10g1299 SBP 5.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1299 - - gmx:100782285 236.498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1299 10 18374952 18376934 Vra10g1299 10 18374952 18376934 ECH
Vra5g2853 5 36619805 36622403 Vra10g1299 10 18374952 18376934 ECH
Vra7g1833 7 37656019 37658168 Vra10g1299 10 18374952 18376934 PCT