Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1296 ATGTCTCTCCCTGATTCTCCCGTGCCCGATGATATCGAGACCGATCCATCCGAAGAAGAGGAAGAAGTCGAAGAGGAAACAGAGGAGGAGGAAGCTGAAGAAGTGGAAGAGGAGGAGATTGAGGAAGAAGTAGAAGAGGAAGATTTTGAAGAAGAGGTAGAGGAGGAAGAGGTTGAGGAAGTAGATGAGGAAGAAGTGGATGGGGAAGAGGTCGAGGAAGTAGATGAGGAAGAAGTGGATGAGGAAGAGGTCGAGGAAGTAGAGGAGGAAGAGGAAGTGGAAGAGATGGAGTTAGAAGAAGAGGAAGACGAAGAGGGAGATGGAGAACAAGAAGTAGAGGAAGTGGAGGTAGAGGAAGAAGAGACAGAGGGAGAAGAAGAAGAAGTAGAAGTTGAGGTAGAAGAAGAGGAAGAGGGAGAACACGAAGTAGAAGAAGGGGAGGGAGAAGTCCAAGAGGATGAAGGAGAACAAGAGAAACAAGAACAAGAAGCACTGGAGGATAATAAAGAAGACCAACAACAGAAACAAAGAGAAGCAGTGGAGGAGAAGAAGGAAGAGCAACCACAACAACTAGAAGAAACAGCGGAGGAGAAGAAAGAAGAGCAACGACAGCAACAAGAAGAAGCAGTGGAGGAGAAGAAGAAAGAGCAAGAACAACAACAAGAAAAAGCTATGGAGGAGAAGAAGAATGAACAACATTTGCAACAAGAAGCAATGAAAGAGAAGGAGGGACAGCAAAAAGAAGAAACAGTGGGGGAGGATAGATTGGCGGTGAAAGGTTCTCCACCCGATGCTGATAAGGGTCGGCAAGATTTGAGCCTACATATGGAGTCTAAGGAACAAGACAAAAACTTGGGGCCAAATTATTCTGTGGTTGAAAACCCTGAAGTAATTCCACCATCTAGTGTGCATTGCATCGAAGAGACTGATGCGATGCTCAAAATATCTGTTCCTTCACGTGAGATACTGACATTGAAAAAGGAAGAGCTTCATCTGAAATATGACATTTCAAGTCATTCGAAATCAAGAGAAAATCTGACTAATGTTGAAAATTGTAGAAGTCAAGGACTAGAAGTTGATGTTGAAAATGCTGGATCCCTTCTGCAGAAGGAAATACAGGGTGGATACAGTGAGTTAGGTTCCAATAGCAAGCCTAATTTATGTGATGATAATGATATTGATTCCAGGGGCAGGGCCACCAAGTCATCTAGTGATACTGGACAAGATATGGTCATTTGCCTGCTTCCAAAAAATTGTATTGTTGAGGATGCTAGTGGTGGTCAGAATTCTAGGAACAATATCAAGCAGTTAGAGAGGGAGGAGTCAAGGGATGATATGAAGCAAACACTGTCAAGGACTAGAAGTATGTCTCCCAGTGCTGAGATTAAAATCACAAACAAACGACCAAAAATTATATGTGATTTTTTTGCTAAAGGATGGTGTATCAGAGGTAGTTCCTGTAGCTTTCTTCATATAAAAGATACTGTGGATAAGACAGATCAGGAGGCTGAAGCTGACTTAGTTACTGCTCATCAGAAGAGAAAATTGAAAGTGGAAGAAGGTGTTAGGGACAATGTTCAGAGAATGAGGATGAATGAGCAAGAACAAACTCCTAGTTGGCATCCATCTCAAGAAAAACAGAACTTTACGCCGAGGGACAACTTGTTTCCAGAGAATAGATTTGCATTTAGTTCAACAAGCAATTATTTCAACCCAAATCAGGATGGAATGACTACTCTTCGGAACCAACATATATACAAAGGATACGCTTCCACTCTTTTGAACCATTCACCAAATTCAAGCCTGGTTACTCAATTTCCATCTTCAAGTATGTCACTCTCTCACCGGATTTCTTCTCAATCAGCATGTTCATTGCCTTTTAGTTCATCTTTGGGGGCTGGTAATCTGAACTCCCAAAAGCTTTTGAGCACTGATAAAGAATATCTCACATCTAAGTCCACTTTCTCTGGTTCAGGGCGGGAGGATTTTCGTCTAGTTAGTTCTTCCAGCGTTCCATCTTATCCCACTGGATATAAATCAAAAATCTGTTCTTATGATTGGGAACCTTCTGTGCCCTTCCGGCCATCCTTTTTTATCACTCCCATGAATGTATCATCTCCTGGAGATCTTTATGACCCTCTTCGAGATAGCATTGAGATACCTAATATAGGGGATGGGTCTTTGAAGGCTTCCCTTTTAATTCAAGGATCTAACGTACTGGCTTCATCACAGGCTCCGATATATGGTGATTCTGCTGTGATTGGGAAATACACGTCCAGTGTTAATGATGACAAAAGTTCTGTATCTTCACATAATAAACTTTATGAAAATGAGCCAAACAAAAACTCTGTTCCTCATGAAAAAAATACTGAAACAGAGATAACGTCAGGAACTTATGTAAACTATCAAAATGGTAAAATTGGCACGGGACAAAATACCTTAGGTGTTGCAGATAGTACAATAAAGGAGAGAGAAATGACTGAGCATGATGCTAGACGACATGGTGAAGGATCAGGGCACAAAACAAAGAGAGGAGACAGGGATAAGAAAAATCATGAAATAGATGTTGACTTTCAGATGGATGGCAGCATGCAGAAGGAACCAAAGGCACTAAAAATGTTACGTGCAGCTCTTGTTGATCATGTAAAAGAGTTATTAAAACCAGTTTGGCATGAGGGTCGTCTTAGCAAGGATGCACATATTATGATAGTCAGAAAATCAGTTGACAAGGTTGTTAGCACCATAGAGCCCCATCAGATTCCTACCATAGATACTGCCAAGCAATATGTTTCTTCAAGTCGGGCAAAAATTGCAAAGCTGGTCAATGGATATGTCAACAAATATGGCAAATCTTGA 2856 0.4139 MSLPDSPVPDDIETDPSEEEEEVEEETEEEEAEEVEEEEIEEEVEEEDFEEEVEEEEVEEVDEEEVDGEEVEEVDEEEVDEEEVEEVEEEEEVEEMELEEEEDEEGDGEQEVEEVEVEEEETEGEEEEVEVEVEEEEEGEHEVEEGEGEVQEDEGEQEKQEQEALEDNKEDQQQKQREAVEEKKEEQPQQLEETAEEKKEEQRQQQEEAVEEKKKEQEQQQEKAMEEKKNEQHLQQEAMKEKEGQQKEETVGEDRLAVKGSPPDADKGRQDLSLHMESKEQDKNLGPNYSVVENPEVIPPSSVHCIEETDAMLKISVPSREILTLKKEELHLKYDISSHSKSRENLTNVENCRSQGLEVDVENAGSLLQKEIQGGYSELGSNSKPNLCDDNDIDSRGRATKSSSDTGQDMVICLLPKNCIVEDASGGQNSRNNIKQLEREESRDDMKQTLSRTRSMSPSAEIKITNKRPKIICDFFAKGWCIRGSSCSFLHIKDTVDKTDQEAEADLVTAHQKRKLKVEEGVRDNVQRMRMNEQEQTPSWHPSQEKQNFTPRDNLFPENRFAFSSTSNYFNPNQDGMTTLRNQHIYKGYASTLLNHSPNSSLVTQFPSSSMSLSHRISSQSACSLPFSSSLGAGNLNSQKLLSTDKEYLTSKSTFSGSGREDFRLVSSSSVPSYPTGYKSKICSYDWEPSVPFRPSFFITPMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIQGSNVLASSQAPIYGDSAVIGKYTSSVNDDKSSVSSHNKLYENEPNKNSVPHEKNTETEITSGTYVNYQNGKIGTGQNTLGVADSTIKEREMTEHDARRHGEGSGHKTKRGDRDKKNHEIDVDFQMDGSMQKEPKALKMLRAALVDHVKELLKPVWHEGRLSKDAHIMIVRKSVDKVVSTIEPHQIPTIDTAKQYVSSSRAKIAKLVNGYVNKYGKS* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1296 951 MobiDBLite consensus disorder prediction 434 450 - -
Vra10g1296 951 MobiDBLite consensus disorder prediction 162 270 - -
Vra10g1296 951 Coils Coil 74 139 - -
Vra10g1296 951 Coils Coil 143 245 - -
Vra10g1296 951 MobiDBLite consensus disorder prediction 760 788 - -
Vra10g1296 951 ProSiteProfiles Zinc finger C3H1-type profile. 467 494 IPR000571 GO:0046872
Vra10g1296 951 MobiDBLite consensus disorder prediction 425 458 - -
Vra10g1296 951 MobiDBLite consensus disorder prediction 760 779 - -
Vra10g1296 951 SUPERFAMILY CCCH zinc finger 467 491 IPR036855 GO:0046872
Vra10g1296 951 MobiDBLite consensus disorder prediction 1 270 - -
Vra10g1296 951 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 108 951 - -
Vra10g1296 951 MobiDBLite consensus disorder prediction 376 404 - -
Vra10g1296 951 Coils Coil 17 66 - -
Vra10g1296 951 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 108 951 - -
Vra10g1296 951 MobiDBLite consensus disorder prediction 825 853 - -
Vra10g1296 951 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 472 491 IPR000571 GO:0046872
Vra10g1296 951 MobiDBLite consensus disorder prediction 11 161 - -
Vra10g1296 951 SMART c3hfinal6 468 493 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1296 Vra-Chr10 18337765 18353232 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra10g1296 zf-CCCH 8.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1296 - - vra:106775763 1482.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1296 10 18337765 18353232 Vra10g1296 10 18337765 18353232 ECH