Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra10g1294 | ATGATGGCGTCTTCTTCTTCTTCGGGCTCTCGCGAGGGGCACTACAGAGGCGTCAGGAAGCGACCCTGGGGACGCTACGCCGCCGAAATACGTGACCCTTGGAAGAAGACACGTGTCTGGTTGGGCACATTCGATACTCCCGAGGAGGCCGCCCTCGCCTACGACGGCGCCGCCCGCTCTCTCCGCGGCGCCAAGGCTAAGACCAACTTTCCCCCGGCTCCCGCCCTCTGCCTCGACCTCAACGCCCCTTCTTCCGATCACCGCTGGCCCAACGTCCCCTCCCGCACCCTCGTCCTCACCGAGTTCCTCCACACCGCCGTTCTCAAAGACATCGAACCGCCACAACCTCTTCCCCCCGCCACCGCCCCCGCTCTCCGCCGCCCTGACGCCGGCGTTCCTCTCGGTGGTGGAGTTCAGGTGGTGGAGAGCTCACAGACGGCGTCGTTTTTGGGACTGGTTCGGCGCGGGATCCCCATCGACTTGAACGAGCCTCCACCGCTGTGGCTATGA | 510 | 0.6529 | MMASSSSSGSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPALCLDLNAPSSDHRWPNVPSRTLVLTEFLHTAVLKDIEPPQPLPPATAPALRRPDAGVPLGGGVQVVESSQTASFLGLVRRGIPIDLNEPPPLWL* | 170 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra10g1294 | 169 | SUPERFAMILY | DNA-binding domain | 14 | 71 | IPR016177 | GO:0003677 | |
Vra10g1294 | 169 | Pfam | AP2 domain | 14 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Vra10g1294 | 169 | Gene3D | AP2/ERF domain | 14 | 72 | IPR036955 | GO:0003700|GO:0006355 | |
Vra10g1294 | 169 | CDD | AP2 | 14 | 73 | IPR001471 | GO:0003700|GO:0006355 | |
Vra10g1294 | 169 | PRINTS | Ethylene responsive element binding protein signature | 15 | 26 | IPR001471 | GO:0003700|GO:0006355 | |
Vra10g1294 | 169 | PRINTS | Ethylene responsive element binding protein signature | 37 | 53 | IPR001471 | GO:0003700|GO:0006355 | |
Vra10g1294 | 169 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 9 | 159 | - | - | |
Vra10g1294 | 169 | SMART | rav1_2 | 14 | 77 | IPR001471 | GO:0003700|GO:0006355 | |
Vra10g1294 | 169 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE | 9 | 159 | - | - | |
Vra10g1294 | 169 | ProSiteProfiles | AP2/ERF domain profile. | 14 | 71 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra10g1294 | Vra-Chr10 | 18318316 | 18319807 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra10g1294 | 5 | 169 | AP2-EREBP Transcription Factor Family | AT1G28360 | 47.449 | 1.52e-44 | 144 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Vra10g1294 | AP2 | 2.5e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra10g1294 | - | - | gmx:100798369 | 269.626 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vra10g1294 | 10 | 18318316 | 18319807 | Vra10g1294 | 10 | 18318316 | 18319807 | ECH |