Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1294 ATGATGGCGTCTTCTTCTTCTTCGGGCTCTCGCGAGGGGCACTACAGAGGCGTCAGGAAGCGACCCTGGGGACGCTACGCCGCCGAAATACGTGACCCTTGGAAGAAGACACGTGTCTGGTTGGGCACATTCGATACTCCCGAGGAGGCCGCCCTCGCCTACGACGGCGCCGCCCGCTCTCTCCGCGGCGCCAAGGCTAAGACCAACTTTCCCCCGGCTCCCGCCCTCTGCCTCGACCTCAACGCCCCTTCTTCCGATCACCGCTGGCCCAACGTCCCCTCCCGCACCCTCGTCCTCACCGAGTTCCTCCACACCGCCGTTCTCAAAGACATCGAACCGCCACAACCTCTTCCCCCCGCCACCGCCCCCGCTCTCCGCCGCCCTGACGCCGGCGTTCCTCTCGGTGGTGGAGTTCAGGTGGTGGAGAGCTCACAGACGGCGTCGTTTTTGGGACTGGTTCGGCGCGGGATCCCCATCGACTTGAACGAGCCTCCACCGCTGTGGCTATGA 510 0.6529 MMASSSSSGSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPALCLDLNAPSSDHRWPNVPSRTLVLTEFLHTAVLKDIEPPQPLPPATAPALRRPDAGVPLGGGVQVVESSQTASFLGLVRRGIPIDLNEPPPLWL* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1294 169 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Vra10g1294 169 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Vra10g1294 169 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
Vra10g1294 169 CDD AP2 14 73 IPR001471 GO:0003700|GO:0006355
Vra10g1294 169 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Vra10g1294 169 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Vra10g1294 169 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 159 - -
Vra10g1294 169 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Vra10g1294 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 9 159 - -
Vra10g1294 169 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1294 Vra-Chr10 18318316 18319807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1294 5 169 AP2-EREBP Transcription Factor Family AT1G28360 47.449 1.52e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra10g1294 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1294 - - gmx:100798369 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1294 10 18318316 18319807 Vra10g1294 10 18318316 18319807 ECH