Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1293 ATGGCCCCCAGGGACAAGACCACTGCCGTTAAGGTTAACACTAACGCTAACGCCGCCGGAGTCAAGGAGGTGCATTTTCGGGGAGTCAGGAAGAGACCCTGGGGAAGATACGCCGCCGAGATCAGAGATCCCGGCAAGAAGAGCCGCGTTTGGCTAGGCACCTTCGACACGGCGGAGGAGGCGGCGCGTGCCTACGACGCCGCTGCTCGGGAGTTTCGCGGCCCCAAGGCCAAGACTAATTTCCCTCCTCCATCCGATAGTAATGTCAAGAACGCCAGCCCCAGCCAGAGCAGCACCGTCGAGTCTTCCAGTCGTGACCGCGATGTCGCCGCCGATTCTTCCCCTCTGGACCTCAACCTTGCCCCGGCCGCCGTCTCCGCTGCCCGCTTCCCTTTCCAGCACCAGTTCCCCATTTTTCCTCCTGCCAACCAGGTTTTGTACTTGGATGCTGTCATGCGCGCCGGTTTGGGCGGCCCGCGTGGGTTTGGGTTTGGCTACAATCAGCATCCCGTTGCGGCGAGCGAGTTCCACGCGACGACCAGCGACTCGGACTCATCCTCCGTGATCGATCTGAACCACAACGAAGGCGATGTGAAGGGGAGCGGTTCCAGAATTTTCGATCTCGACCTTAATAACCCTCCTCCACAGGAGATGGCCTGA 660 0.6045 MAPRDKTTAVKVNTNANAAGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPPPSDSNVKNASPSQSSTVESSSRDRDVAADSSPLDLNLAPAAVSAARFPFQHQFPIFPPANQVLYLDAVMRAGLGGPRGFGFGYNQHPVAASEFHATTSDSDSSSVIDLNHNEGDVKGSGSRIFDLDLNNPPPQEMA* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1293 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 198 - -
Vra10g1293 219 MobiDBLite consensus disorder prediction 193 219 - -
Vra10g1293 219 SUPERFAMILY DNA-binding domain 25 82 IPR016177 GO:0003677
Vra10g1293 219 MobiDBLite consensus disorder prediction 81 104 - -
Vra10g1293 219 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Vra10g1293 219 MobiDBLite consensus disorder prediction 72 112 - -
Vra10g1293 219 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Vra10g1293 219 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Vra10g1293 219 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Vra10g1293 219 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Vra10g1293 219 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Vra10g1293 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 198 - -
Vra10g1293 219 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1293 Vra-Chr10 18302143 18303252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1293 22 148 AP2-EREBP Transcription Factor Family AT5G44210 50.345 2.47e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra10g1293 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1293 K09286 - gmx:100170742 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1293 10 18302143 18303252 Vra10g1293 10 18302143 18303252 ECH
Vra2g1197 2 16215113 16216006 Vra10g1293 10 18302143 18303252 ECH
Vra2g1055 2 11540168 11540975 Vra10g1293 10 18302143 18303252 ECH