Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1285 ATGGACTACTATGGGATTTTGGAAGTTGACAAGAATGCCTCAGAAGAAGAATTGAAGAAAGCCTACAGAAAGCTTGCAATGAAATGGCACCCTGATAAGAACCCAACCAATAAAAAGGAGGCTGAGATTAGATTCAAACAGATATCCGAAGCCTACGAGGTTCTGAGTGATCCTCAGAAGAGAGAAATTTATGATAGGTATGGAGAAGGTGGGCTTAAAGGTGAAATACCAACAAGGGATGAAGGTATGGCTTCCTTCTTCCGAACTGGGGATGGCCCACAACCATTTAATTTCAATCCCAGAAATGCAAACAACATTTTTGCAGAAGTGTTTGGGAGTTCATCCCCATATGGAGGAATGGGAAGGGGGTTTGAGTGTGGTGGTAGAGGCCTGGGCACGAGGGGGAGATCGTGGGTATCAAGATCCTTTCCTGGAATGTTTGGCAATGACATGTTCAGAGAAGGCGGGCCAATGAATGAAGCTCCACGCCGCAAGGCTCCTCCTATCCAAAATACACTGCTTTGCAGCCTTGAGGAACTCTACAAGGGGAGTACCAGAAAGATGAAAATCTCAAGGCAAATTACACTTGCAAGCGGGAGAGTTTTTCCTGTGGAGGAAATATTGAACATTGAAATCCAACCGGGATGGAAGAAGGGAACCAAAATCACTTTCCCAGAGAAAGGAAATGAGCAGCCAAATGTCATTGCAGCTGATCTTGTCTTTATAATTGATGAGAAACCTCACGGTATATTTACAAGAGTTGGTAATGATTTGGTTGTGACACAAAAGATATCACTTAGAGAAGCTGAAGCTCTACCAGGCTACACCATCCAACTTACAACTCTTGATGGCAGGGATCTGAACATCGCCATAAACAACGCCACTGATCCAGATTACGAAGAAGTCATCACCGGGGAAGGCATGCCAATTGCGAAAGATCCTTCAAAGAAGGGTAACCTTAGGATCAAATTCAACATCGAAATCCCAGATGTAGTCGGTGCCTGA 1005 0.4438 MDYYGILEVDKNASEEELKKAYRKLAMKWHPDKNPTNKKEAEIRFKQISEAYEVLSDPQKREIYDRYGEGGLKGEIPTRDEGMASFFRTGDGPQPFNFNPRNANNIFAEVFGSSSPYGGMGRGFECGGRGLGTRGRSWVSRSFPGMFGNDMFREGGPMNEAPRRKAPPIQNTLLCSLEELYKGSTRKMKISRQITLASGRVFPVEEILNIEIQPGWKKGTKITFPEKGNEQPNVIAADLVFIIDEKPHGIFTRVGNDLVVTQKISLREAEALPGYTIQLTTLDGRDLNIAINNATDPDYEEVITGEGMPIAKDPSKKGNLRIKFNIEIPDVVGA* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1285 334 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 330 - -
Vra10g1285 334 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 2 330 - -
Vra10g1285 334 SUPERFAMILY Chaperone J-domain 1 94 IPR036869 -
Vra10g1285 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 251 331 IPR008971 GO:0006457|GO:0051082
Vra10g1285 334 Gene3D DnaJ domain 1 121 IPR036869 -
Vra10g1285 334 Gene3D - 248 330 - -
Vra10g1285 334 PRINTS DnaJ domain signature 4 22 IPR001623 -
Vra10g1285 334 PRINTS DnaJ domain signature 22 37 IPR001623 -
Vra10g1285 334 PRINTS DnaJ domain signature 40 60 IPR001623 -
Vra10g1285 334 PRINTS DnaJ domain signature 60 79 IPR001623 -
Vra10g1285 334 Gene3D - 168 246 - -
Vra10g1285 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 163 258 IPR008971 GO:0006457|GO:0051082
Vra10g1285 334 Pfam DnaJ C terminal domain 170 329 IPR002939 -
Vra10g1285 334 ProSiteProfiles dnaJ domain profile. 2 68 IPR001623 -
Vra10g1285 334 SMART dnaj_3 1 60 IPR001623 -
Vra10g1285 334 CDD DnaJ 2 57 IPR001623 -
Vra10g1285 334 ProSitePatterns Nt-dnaJ domain signature. 45 64 IPR018253 -
Vra10g1285 334 CDD DnaJ_C 167 330 - -
Vra10g1285 334 Pfam DnaJ domain 2 65 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1285 Vra-Chr10 18236796 18239541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1285 3 67 C2H2 Transcription Factor Family AT1G74250 39.130 3.37e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1285 K09510 - gmx:100804763 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1285 10 18236796 18239541 Vra10g1285 10 18236796 18239541 ECH