Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1284 ATGGAGGCGGAGCCAGAGAACAACGAGGTGAAGAGGGAAGAAAACAGCAATGACGACAACAACAACAACAACAATGAAAGTAACAGCAAATTTGGAAATTCTAGTGAGGGTCAGAGCAAGCCCAAGCGCCAGATGAAGACACCGTTTCAGCTTGAAACGCTCGAGAAAGCTTATGCTGTGGAGAATTACCCGTCCGAGATGATGAGAGCAGAGTTGTCTGAGAAGTTGGGGTTGTCGGATCGGCAGTTGCAGATGTGGTTCTGTCACCGGCGGTTGAAGGACAAGAAGGACTTGCCCTCCAAAAAGCTGCGTAAGGCTGCGGCGTTAACTGATTCTCCGGTTGAGGAGCCCAAGCTGGCTTCTGAAGTGGGTGCTGAATACGGATCCGGGTCGGGTTCAGGGTCCAGTCCGTTTACCCGTTCGGAGTTGAGGAATGTGGTTCCCAGGGGGTACTATGAGTCGCCACAGACTATAATGGAGCTTAGAGCAATTGCTTGTGTGGAGGCTCAGTTGGGGGAGCCTTTAAGAGAAGATGGACCTATTCTTGGAGTTGAGTTTGATCCGTTGCCTCCAGATGCATTTGGGGCACCATTAGCTGTTACAGATCCTCAAAAGCGGCCTAGTCTTGCCTATGAAAATAAAGTGTATGAAAGACATGATGTTAGGACAAACAAGGCAATAGCAAGGACATTCCATGAATATCCCTTTCTTCCAACCCAGTCTGGCATTAGATCTGATGTTTTTGGACAACTAAACCTGCCCCATTTACATGAACCAATGGAGGGTCCGGCAAGAACACCTTTTCCCCTTGGAAATGAACAACCTAGAATTCATGCTCCTCAAAGTCATTCTTCTCGTGTTCGTCTTTTGTCTCAACCACAGGACAAGCAAGTGATTCCCTATCCGTCTCCCCCTCGAGAAAATGATGTTGTACCCAAAAGGGAACCTCACATAAACATAACTAATACTGGAATGAACTCCCACTATGCTACTGATCACCCAATTGTTGGACAAGAAATTCCATATGCTTTACCTGGTGGGCAAGTATCCCATAATGATGCAGTATTGAGGATGGAGAGGAAAAGGAAGATTGATGAAGCCAGAGTTGCAAAGGAAGTTGAAGCCTATGAAATGAGGATGCGGAAAGAGCTTGAGAAACAAGATAACCTCAGACGAAAGAGTGAAGAGAGATTGAAGAAGGAAATGGAAAGGCAAGATCGTGAGAGAAGGAAGGAAGAAGAGAGGTTGTTGCGTGAGAAACAACGAGAAGAGGAAAGATCAAAACGTGAGCAAAGGCGGGAAATGGAGCGAAGGGAAAAGTTTTTGTTGAAAGAACATTTGAGAGCTGAGAAAAGGAGGCAAAAAGAAGAGATCCGCAAAGAGAAAGAGGAAGAGAGGAGGAAAGCTGCACTTGAGAAGGCAAATGCTCGGAGAATAGCTAAAGAATCTATGGAGCTTATTGAGGATGAACAACTTGAATTGATGGAGTTGGCTGCTGCAAGCAAGGGGCTTTCCTCTATTATTCATATTGATCTTGATACTTTGCAGAACCTTGAATCATTTAGGGATTCATTGTGTGTATTCCCCCCCAAAAGTGTAAAGCTGAGAAAACCATTTGCTATCCAACCCTGGAGCAACTCAGAACAGAATGTTGGGAACCTTCTCATGGTTTGGAGATTCTTGATTACTTTTGCTGATGTTCTTGATTTATGGCCTTTTACTCTTGATGAGTTTGTACAGGCATTTCATGACTATGATTCTAGATTGTTGGGCGAGATACATGTTGCTCTTCTCAAGGTGATAATAAAGGACATTGAAGATGTTGCTAGGACACCTTCTACAGGATTGGGGATGAATCAGAACGGAGCTGCGAATCCTGGAGGTGGCCATCCAGAGATCGTGGAAGGAGCATATGCATGGGGCTTTGACATACGAAATTGGCAGAAGAACTTGAATCAGTTGACATGGCCAGAAATTTTCCGACAGTTAGCACTCTCTGCAGGATTAGGACCACACCTGAAGAAAAGAAGTATTGCATGGTCATACACAATTGATAAAGACGAGGGAAAAAGTTGTGTAGATATCATTTCTACACTTCGTAATGGTTCAGCAGCTGAAAGTGCTGTGGCAAAAATGCAAGAGAGAGGTCTATTAGCTCCCCGAAGATCAAGGCACCGGTTAACTCCTGGAACAGTTAAATTTGCAGCATTTCATGTTCTCTCATTGGAGGGTAGTAAGGGCTTGACAGTGCTGGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTCCGAGACCTAACGACCAGCAAGACTCCTGAAGCATCAATTTCTGTTGCTTTGACAAGAGACACTAAATTGTTTGAAAGAATAGCTCCATCAACATACTGTGTACGAGATGCATTCAGAAAAGATCCTGCTGATGCTGACTCCATTCTTTCAGAAGCTAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGGTGAAGATGCTGATGATGTTGAAAGAGAAGAGGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGATGATGATTTAGTGAATCCTTTGAGTGCAAACCAAAATTCTGAACAGTATGATGACACAAACATTTGCTCATCAAATGGAAAAGAAAATTTGAGTCACAACATAGATCTTATTCAAAATGAGTTTGATACAGATTTACCCTGTCTTCCTAAGAATGGTTCAACGGGTGCTGATTGTCCCAGTTCTGTCACCAGACCTGTTGCTTCTGGAGATTTAAATGCTGGCAATCTTGATCAAGATAATATGGAAATTGATGAAAGCATATCTGGAGAGTCCTGGATTCTAGGACTTGCAGAAGGAGAATATTCCGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGCTTTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTCCTCGAGGATCGACTGGAATCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGATGCACAGATTGACAAAGTTCGTCTGAAAGATGATAATATTAGTAAATTAGATTTTCCATCTATTACTGGAAATAAAGTTGAAACACAATACACATATCCAGCTGCGGAGGGACACCAAAGCCCAATAATGCTTGACATTAATATTAACAATAATGAAGCATCACCCAGCACTGCAGAAAACCAAAAGGGAGCTCCTGTTGGACTGAGCATGCCTATGGAGAAGTCCTCATCAGTTCAAGATTTTGGCAGTGGTACTGGTGCAGACATCCCTCAGACTCAAGTACCTGTACAATATTCCAAAAGGTCACGTTCACAGTTGAAATCTTATTTTGCCCACCTAGCTGAGGAGATGTATGTCTACAGGTCTTTACCCCTTGGCCAAGATCGCAGACGTAATCGATATTGGCAGTTTGTTGCATCTGCTTCTAGCAGTGATCCTGGTTCGGGCAGGATCTTTGTTGAATGTCATGATGATGGCAAGTGGTGGCTCATTGATTCTGAAGAGGCCTTTGATTCTCTTTTGACATCATTGGATTCACGTGGGCTCAGGGAATCTCATTTGCGCTTAATGTTGCAAAGGATTGAGAGTTCCTTTAAAGAAAATGTTCGTAAGAGGAATGCACATTGTGCCAAAAATGGAAGCAGAGGTGAAGTTTCTATTAAAGTTGAAGCTAATGAACCATTTTCCATCCCTGACCACAATGCTGGATCTGACAGTCCTAGCAGTATCCTCTATGACTTGAACACTGATACATCTGAAGTTTCATCGTCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGTGAGAAGAAAGCTGCCTTGAGAAGGTATCATGATTTTCAGAAGTGGTTGTGGAAAGAATGCTATAATTCATCAGTTTTATGTGCAATGAAATATGGGATAAAGAGATGCAAACCTCAGATGGACATTTGTGATATCTGTCTCGATCTTTATTTTGTTGAAGACTCCCATTGCAGTTCCTGCCACCGGACTTTTTCCTCAAATAATGGATTTAATTTTTCTAAGCATGCATTTCAATGTCGAGACAAATTATCCAAAGATAATTGTATTTTGGAATACTCTCTTCCCTTGCGGACAAGATTGCTTAAGATCCTGTTGGCTTGTATGGAGGTATCTGTTCTATCTGAAGCATTTGGAACAAATTGGACCGATGATATTAGGAAGCACTGGGGTGTAAAGTTGAGCAAATCATCTTCTGTTGAGGAACTTATACAGATATTGACCCTATTTGAGAAAGCACTACGGCGAGATTTTCTGTCATCTAACTTCTCTACAACAGATGAATTGTTGGGATCAAGTAGTACGTTAGAATGTTCTGGGCAGGCTTCAACTGATCCGGAAACTGTTCCCGTGCTTCCTTGGGTTCCACTAACAACTGCAGCTTTGTCTCTCAGACTTTTTGAGATTGATTCATCCATCAGCTATGTAAAACCCGAGAGACTTGAGCCTTCTGAGGAAAAAGAAGCAAGAGAATACATAAGGTTTCCATCAAGATATACTCACTTGAAATCTAATAGGGAGGTTGAACCAGCAGAATTCGACCACGATGAATTCGCTAAAGATAAATCTGTTCCTAAGAAAATTGTACGAAGTGGCAATAAACGTAGTCGAGGGACTAATGAACAAGGACGGGGCAAAAAACTGGCTAAAAGAGTGTACAATTCCAAACGAGACGGTGGTCGGAAGAATGCTAAGGTCACTGTCAATCTAAGTCACAAATTAAAACAGCAGGCACGAGGAACACAAGGACAAGGTGCTGGGCGAGGTCGCCGAACTGTAAGAAAGCGGAGAGTGGGAAAGCGAGCTGTTGAAGATTTGTTGCTGGGCCATACAACAGCGAGCCATAGCTCCAAGATTGATAGAGAACCACTGAAAAACTTGGATGAGGAATGGGATGGACAAAAGGCGAGTCCCATGACTCCGGTGCACATTGGCGTTGCTGCTGACAATAGTAATAGTGCTGAAGAGGTAGAATCTGATTATGACCATGCTCAAGCTGTGGAATATGATCAAGGGAACTGGGAGGTAGGTTTTAACGGTGTTCCCCCCAACAGATGGAGTGGGGATTTGGTTGGAATGAGTGACGAAGATGTGGATGCTTCTGAAGACGACAATGACAATGGCATTGAAGAGAATGAAGATGAGGATTCAGAAGCAGATGTTATGAGTGAGGGTTCAGATGGGATGGGAAATAGGGTAGTAAACGTTGGAGGCTCATACTCAGCTTTGTCTGAAGATTCTTCAGATTAG 5262 0.4299 MEAEPENNEVKREENSNDDNNNNNNESNSKFGNSSEGQSKPKRQMKTPFQLETLEKAYAVENYPSEMMRAELSEKLGLSDRQLQMWFCHRRLKDKKDLPSKKLRKAAALTDSPVEEPKLASEVGAEYGSGSGSGSSPFTRSELRNVVPRGYYESPQTIMELRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPLAVTDPQKRPSLAYENKVYERHDVRTNKAIARTFHEYPFLPTQSGIRSDVFGQLNLPHLHEPMEGPARTPFPLGNEQPRIHAPQSHSSRVRLLSQPQDKQVIPYPSPPRENDVVPKREPHINITNTGMNSHYATDHPIVGQEIPYALPGGQVSHNDAVLRMERKRKIDEARVAKEVEAYEMRMRKELEKQDNLRRKSEERLKKEMERQDRERRKEEERLLREKQREEERSKREQRREMERREKFLLKEHLRAEKRRQKEEIRKEKEEERRKAALEKANARRIAKESMELIEDEQLELMELAAASKGLSSIIHIDLDTLQNLESFRDSLCVFPPKSVKLRKPFAIQPWSNSEQNVGNLLMVWRFLITFADVLDLWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGMNQNGAANPGGGHPEIVEGAYAWGFDIRNWQKNLNQLTWPEIFRQLALSAGLGPHLKKRSIAWSYTIDKDEGKSCVDIISTLRNGSAAESAVAKMQERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRDAFRKDPADADSILSEARKKIQIFENGFLAGEDADDVEREEESESDEVDEDPEDDDLVNPLSANQNSEQYDDTNICSSNGKENLSHNIDLIQNEFDTDLPCLPKNGSTGADCPSSVTRPVASGDLNAGNLDQDNMEIDESISGESWILGLAEGEYSDLSVEERLNALVALVGVANEGNSIRVVLEDRLESANALKKQMWADAQIDKVRLKDDNISKLDFPSITGNKVETQYTYPAAEGHQSPIMLDININNNEASPSTAENQKGAPVGLSMPMEKSSSVQDFGSGTGADIPQTQVPVQYSKRSRSQLKSYFAHLAEEMYVYRSLPLGQDRRRNRYWQFVASASSSDPGSGRIFVECHDDGKWWLIDSEEAFDSLLTSLDSRGLRESHLRLMLQRIESSFKENVRKRNAHCAKNGSRGEVSIKVEANEPFSIPDHNAGSDSPSSILYDLNTDTSEVSSSFKIELGKSESEKKAALRRYHDFQKWLWKECYNSSVLCAMKYGIKRCKPQMDICDICLDLYFVEDSHCSSCHRTFSSNNGFNFSKHAFQCRDKLSKDNCILEYSLPLRTRLLKILLACMEVSVLSEAFGTNWTDDIRKHWGVKLSKSSSVEELIQILTLFEKALRRDFLSSNFSTTDELLGSSSTLECSGQASTDPETVPVLPWVPLTTAALSLRLFEIDSSISYVKPERLEPSEEKEAREYIRFPSRYTHLKSNREVEPAEFDHDEFAKDKSVPKKIVRSGNKRSRGTNEQGRGKKLAKRVYNSKRDGGRKNAKVTVNLSHKLKQQARGTQGQGAGRGRRTVRKRRVGKRAVEDLLLGHTTASHSSKIDREPLKNLDEEWDGQKASPMTPVHIGVAADNSNSAEEVESDYDHAQAVEYDQGNWEVGFNGVPPNRWSGDLVGMSDEDVDASEDDNDNGIEENEDEDSEADVMSEGSDGMGNRVVNVGGSYSALSEDSSD* 1754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1284 1753 MobiDBLite consensus disorder prediction 20 46 - -
Vra10g1284 1753 MobiDBLite consensus disorder prediction 1531 1554 - -
Vra10g1284 1753 Pfam HB1, ASXL, restriction endonuclease HTH domain 730 798 IPR007759 GO:0006355
Vra10g1284 1753 MobiDBLite consensus disorder prediction 831 854 - -
Vra10g1284 1753 MobiDBLite consensus disorder prediction 1699 1726 - -
Vra10g1284 1753 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 939 982 IPR028942 -
Vra10g1284 1753 MobiDBLite consensus disorder prediction 387 434 - -
Vra10g1284 1753 Gene3D - 23 98 - -
Vra10g1284 1753 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 5 1753 IPR044977 GO:0006357
Vra10g1284 1753 CDD homeodomain 42 96 IPR001356 GO:0003677
Vra10g1284 1753 ProSiteProfiles DDT domain profile. 548 607 IPR018501 -
Vra10g1284 1753 PANTHER HOMEOBOX DOMAIN PROTEIN 5 1753 - -
Vra10g1284 1753 ProSiteProfiles HARE-type HTH domain profile. 730 799 IPR007759 GO:0006355
Vra10g1284 1753 Pfam Homeodomain 40 96 IPR001356 GO:0003677
Vra10g1284 1753 ProSiteProfiles 'Homeobox' domain profile. 37 97 IPR001356 GO:0003677
Vra10g1284 1753 MobiDBLite consensus disorder prediction 828 874 - -
Vra10g1284 1753 Coils Coil 373 479 - -
Vra10g1284 1753 SMART testlast3 548 607 IPR018501 -
Vra10g1284 1753 MobiDBLite consensus disorder prediction 1 50 - -
Vra10g1284 1753 SMART HOX_1 39 101 IPR001356 GO:0003677
Vra10g1284 1753 MobiDBLite consensus disorder prediction 1 19 - -
Vra10g1284 1753 Pfam DDT domain 550 604 IPR018501 -
Vra10g1284 1753 MobiDBLite consensus disorder prediction 1689 1753 - -
Vra10g1284 1753 MobiDBLite consensus disorder prediction 1577 1600 - -
Vra10g1284 1753 SUPERFAMILY Homeodomain-like 28 96 IPR009057 -
Vra10g1284 1753 MobiDBLite consensus disorder prediction 856 874 - -
Vra10g1284 1753 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1119 1192 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1284 Vra-Chr10 18225576 18236695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1284 33 1683 Homeobox Transcription Factor Family AT1G28420 48.688 0.0 1314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vra10g1284 WSD 6.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1284 - - gmx:100777465 2868.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1852 7 37906161 37917069 Vra10g1284 10 18225576 18236695 PCT