Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1282 ATGTCTCTGCTTCCTCTGTTCTTTCTCTTCACCGTGCTTCTCCTCCAAAATCACTTCTTCATCTCTGCTCTCAACCAAGACGGTTTATATCTGTACCAATGGAAGCAATCCCTCGACGACCCCGACTCGTCTCTGGCGTCCTGGAACAACCGCGACACCACCCCATGCAACTGGGCCGGCGTCACATGCGGCCCAAATAGCAGCGCCGTCACTTCACTCGACCTCTCCAACTTCAACGTTGCAGGCCCATTCTCCGCCAACTTCCTCTGCCGCCTCCCCAACCTCACCTCCATCATCCTCTTCAACAACTCCATCAACCAAACCCTCCCCCTCCAAATATCCCTCTGCACCCCTCTCCTCCACCTTGACCTTTCCCAGAACCTCCTCACCGGCACCCTCCCCCATACACTCCCCCTCCTCCCCAGCCTCCGCTACCTTGACCTCACCGGAAACAACTTCTCCGGCCCCATTCCCCCCTCCTTTGGAACCTTCCAGAACCTCCAAACCCTCTCCCTCGTATTCAACCTCCTTGACGACGTCTTTCCGCCTTCTCTCTTCAATATCACCTCCCTTAAAACTCTCAACCTCTCCTATAACCCCTTCCACCCTTCCCCCATTCCTCACTCCATCGGCAACCTCACCAATCTGGAGACGCTCTGGCTCAGCGCCTGCAATCTCGAGGGCCCCATTCCCGACTCCGTCGGGAACCTCAAAAACCTTCGCGTCTTGGATTTGACCTTCAACAACCTCTATGGACCCATCCCTAGTTCGCTCACTCGCGTCACCACTCTCAAGCAGATTGAGTTGTACAACAACTCGCTCTCCGGTGAATTGCCTAGAGGAATCTCCAACCTCACTTCGTTGCGGCTCTTTGATGTTTCCATGAACCATTTGAGCGGGAGCATTCCCGATGAGCTGTGTCGTCTACCTCTCGAGAGTCTCAACCTCTATGAGAACGGTTTCACCGGGGAGTTGCCGCCGAGTATTGCTGACTCGCCCAACCTCTATGAGCTGAGGTTGTTCGGGAACAAACTCACCGGGTCATTGCCGGACAGTTTAGGGAAGTCCGGTCCTTTGAGGTGGCTTGACGTTTCCACCAACCGTTTCTCCGGTGGGATTCCGGCGAGCCTCTGTGATCACGGCGAGTTGGAGGAGATGTTGATGCTCGGGAACCAGTTCTCCGGGGAGATACCGGCGAGTTTGGGCTCGTGTCGGAGCTTGACGCGTGTGAGGTTGGGTAAGAACCGGTTGTCCGGCGAGGTTCCGGCGGGTATGTGGGGCCTTCCGCATGTGTATTTTCTTGAACTGATGAGTAACTCGTTTAGTGGCTCTATTGCGAGGACCATTGGTGGGGCGAGGAATTTGTCGTCGTTGATTCTGACGAAGAACAATTTCTCGGGTGTGATCCCCGAGGAGATTGGGTGGTTGGAGAATCTTCAAGAATTTTCTGGTGGTGATAACAGGCTCAGTGGGTCGTTGCCTGGGAGTATTGTGAATCTCGGGCAGCTTGGCACTCTTGATCTTCACAACAATATGTTATCCGGGGAGCTCCCCAAGGAGATTCAGTCGTGGAAGAAACTGAATGACTTGAATTTGGCTAATAATGTGATTGGTGGGGAGATTCCTGATGGAATAGGCAGTTTGACTGTGTTGAATTTTCTTGATCTTTCCAACAATCAATTTTCTGGGAATGTTCCTACGGCGTTGCAGAATTTGAAGCTCAATCAGCTCAATCTGTCTTATAATAGGCTTTCTGGAAAGCTTCCCCCACTGCTGGCCAAGGATATGTACAGGGCTAGTTTTATTGGCAATCCTGGCTTGTGCGGGGATTTCAAAGGTTTGTGTGATGGCAAAAATGGGGATAAGGGTAAGGGTTTTGTGTGGATTCTGCGAGCTATTTTTATAGTTGCCACTTTGGTGTTTGTCGTCGGTGTTGTCTGGTTTTACTTAAGGTACAAGAATTTCAAGAATGCCGAGAGATCTGTTGATAAATCAAAGTGGACTTTGATGTCGTTTCATAAACTGGGTTTCAGCGAAGATGAGATCTTGAATTGCCTGGATGAAGATAATGTGATAGGAAGTGGGTCTTCCGGGAAGGTTTACAAGGTTGTGTTGACCAGCGGGGAAGTGGTTGCCGTGAAGAAGATATGGGGCGGCGTCAAGAAGGAAATAGAAAGTGGAGATGTGGAGAGGGGTCAATTTCATCAAGACAGTGCTTTTGACGCAGAGGTTGAAACTTTGGGCAAAATTAGGCACAAGAACATTGTCAAACTGTGGTGTTGCTGCACTACTAGGGACAGCAAGCTATTGGTTTATGAGTATATGCCGAATGGTAGCCTAGGTGATTTACTGCATAGCAATAAAGGAGGGTTGTTGGACTGGCCAACTAGGTATAAGATAGCTGTTGATGCTGCAGAAGGCCTCTCTTATTTGCATCACGACTGTGTTCCTTCAATTGTTCATAGAGATGTGAAATCTAATAACATCTTGTTGGATGGGGACTTCGGTGCAAGGGTGGCAGATTTTGGAGTAGCTAAGGTAGTTGATGCCACCGGGAAAGGAACTAAATCCATGTCTGTTATAGCTGGGTCATGTGGATACATAGCACCAGAATATGCGTACACACTGAGAGTGAATGAGAAGAGTGATATATATAGCTTTGGTGTTGTCGTACTTGAGTTGGTTACTGGAAGGAGACCCATTGACCCTGACTTTGGGGAAAAAGACTTGGTTATGTGGGCGTGCACCACCTTGGATCAGAAAGGCGTGGAACATGTGATTGACTCGAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCCTCAACATTGGCCTCATGTGCACCAGTCCTCTTCCAATCAACCGGCCTGCGATGAGAAGAGTGGTGAAGATGTTACAAGAGGTGGGCACAGAGAACCTAACGAAAGCAGCCAAGAAAGAAGGAAAGTTGTCCCCATATTACTATGACGACGGGTCTGATCATGGAAGTCTTGCTTAG 3003 0.4962 MSLLPLFFLFTVLLLQNHFFISALNQDGLYLYQWKQSLDDPDSSLASWNNRDTTPCNWAGVTCGPNSSAVTSLDLSNFNVAGPFSANFLCRLPNLTSIILFNNSINQTLPLQISLCTPLLHLDLSQNLLTGTLPHTLPLLPSLRYLDLTGNNFSGPIPPSFGTFQNLQTLSLVFNLLDDVFPPSLFNITSLKTLNLSYNPFHPSPIPHSIGNLTNLETLWLSACNLEGPIPDSVGNLKNLRVLDLTFNNLYGPIPSSLTRVTTLKQIELYNNSLSGELPRGISNLTSLRLFDVSMNHLSGSIPDELCRLPLESLNLYENGFTGELPPSIADSPNLYELRLFGNKLTGSLPDSLGKSGPLRWLDVSTNRFSGGIPASLCDHGELEEMLMLGNQFSGEIPASLGSCRSLTRVRLGKNRLSGEVPAGMWGLPHVYFLELMSNSFSGSIARTIGGARNLSSLILTKNNFSGVIPEEIGWLENLQEFSGGDNRLSGSLPGSIVNLGQLGTLDLHNNMLSGELPKEIQSWKKLNDLNLANNVIGGEIPDGIGSLTVLNFLDLSNNQFSGNVPTALQNLKLNQLNLSYNRLSGKLPPLLAKDMYRASFIGNPGLCGDFKGLCDGKNGDKGKGFVWILRAIFIVATLVFVVGVVWFYLRYKNFKNAERSVDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLTSGEVVAVKKIWGGVKKEIESGDVERGQFHQDSAFDAEVETLGKIRHKNIVKLWCCCTTRDSKLLVYEYMPNGSLGDLLHSNKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPSIVHRDVKSNNILLDGDFGARVADFGVAKVVDATGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVVLELVTGRRPIDPDFGEKDLVMWACTTLDQKGVEHVIDSRLDSCFKEEICKVLNIGLMCTSPLPINRPAMRRVVKMLQEVGTENLTKAAKKEGKLSPYYYDDGSDHGSLA* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1282 1000 Pfam Protein kinase domain 688 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1282 1000 Gene3D Phosphorylase Kinase; domain 1 670 774 - -
Vra10g1282 1000 Gene3D Ribonuclease Inhibitor 205 310 IPR032675 -
Vra10g1282 1000 SUPERFAMILY Protein kinase-like (PK-like) 681 967 IPR011009 -
Vra10g1282 1000 Gene3D Ribonuclease Inhibitor 24 204 IPR032675 -
Vra10g1282 1000 SMART serkin_6 686 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1282 1000 SUPERFAMILY RNI-like 72 394 - -
Vra10g1282 1000 SMART LRR_typ_2 237 261 IPR003591 -
Vra10g1282 1000 SMART LRR_typ_2 500 523 IPR003591 -
Vra10g1282 1000 SMART LRR_typ_2 140 166 IPR003591 -
Vra10g1282 1000 SMART LRR_typ_2 92 116 IPR003591 -
Vra10g1282 1000 SMART LRR_typ_2 188 213 IPR003591 -
Vra10g1282 1000 SMART LRR_typ_2 548 571 IPR003591 -
Vra10g1282 1000 SMART LRR_typ_2 285 309 IPR003591 -
Vra10g1282 1000 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 982 - -
Vra10g1282 1000 PANTHER LRR RECEPTOR-LIKE KINASE 10 982 - -
Vra10g1282 1000 SUPERFAMILY L domain-like 311 608 - -
Vra10g1282 1000 Pfam Leucine rich repeat 93 153 IPR001611 GO:0005515
Vra10g1282 1000 ProSiteProfiles Protein kinase domain profile. 686 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1282 1000 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Vra10g1282 1000 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Vra10g1282 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Vra10g1282 1000 Pfam Leucine Rich Repeat 190 213 IPR001611 GO:0005515
Vra10g1282 1000 Gene3D Ribonuclease Inhibitor 311 618 IPR032675 -
Vra10g1282 1000 Gene3D Transferase(Phosphotransferase) domain 1 775 991 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1282 Vra-Chr10 18205986 18209877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1282 21 1000 Receptor kinase-like Gene Family AT1G28440 67.951 0.0 1360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra10g1282 Pkinase 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1282 - - gmx:100776936 1763.43