Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1280 ATGAGAGGTAGGGTTGCCAGCTATCAACTACCACAACTAATCCGACCGATCCATCTATCCATCCACCCATTTTGTCAACCATATTCTCTCTTTTTTCCTTTTCAACTGTTTGATATCTCCCCATCAAACTCACATGTATATAAGCTTCTTTTCACACACACACGAACCATCCAATCTCAGCTTCTTCCTTCAACCACCAATAACCCATCACTGCCAATCACAAACCAGATATCCACACCCTTCAAAACATTCAAAATGAACGCTGCGGAGCATATCGCTTATGATATGGTCATGATCACTCTATCCATATCTCTCATCGTTCTTGCCATCATCCTCTTCCTAGCTTGCAAGAAGAAACCCGTTGAATCCGAAGAAACACTTCCCGTTAAGTTGTGTGCTCGTGCATACCCCTTGACGGAAGTTGATGCCGCCACCGATGGCTTCAACCACAGGAGAATCATCGGGCAGGGTCGCTTGGGAACCGTGTATGCGGGGACTCTGGAGAAAGAAGAGCTGTTAGCCGTTAAAAGGATTCACCCCGTTCTTGTGTTGAGCAATGCAGGTTTTGGTTTCTCATCCGTGTTGAAGTGGCTCTCATTGGCTCAACACCCGAACGTAGTTCCAATCATAGGGTTCTCAGAAGCAGCGGGTGAGAGAGTAATTCTGATGGAGTTTGTGCACATGGCGAGCTTGGACTTCTACTTGCATAAAAACAAAGACGGGGCTTCACTTCTGGATTGGAACAAGAGGTTGAGGATTGCAGCTGGAGCAGCGAGAGGGCTTGAATACCTGCATGAAGTGGTGGCACCAAACATTGTACATGGGTGTGTTAAGTCGTCTAATATCCTGATCGATGTGAACTTCTGTGCTAGGATTTGTGATTATGGGCTTAACTTTTTGGCACCTGTGGAAAAGAGAGGAGTGGTGGGGTATGTGGATGATGAATATTGGAGTGAAAGAAGGGGTGGTGGAGCTACCAAGGAGAGTGATGTTTATGGGTTAGGAGTAGTCCTGCTGGAGCTTTTAACAGGGAAAGGGTGTGAGGGAGGGTTGTTGGTGAAGTGGGCATTGCCTTTAATTAGAGAAACCAGTTTTAGTGAACTTTTAGATCCTAGGTTGGTGATTCCTTCTGACACCAAGCCTCTCGTTAGATTAGCCAAAGTTGCTTTAGCATGTGTCGGTAACTCACGGAAATGTAGGCCTTCTGTCGCTCAAGTGGCTACCATTTTGAACAATTTAGAGACTGAAGTCTGCCTCTGA 1260 0.4603 MRGRVASYQLPQLIRPIHLSIHPFCQPYSLFFPFQLFDISPSNSHVYKLLFTHTRTIQSQLLPSTTNNPSLPITNQISTPFKTFKMNAAEHIAYDMVMITLSISLIVLAIILFLACKKKPVESEETLPVKLCARAYPLTEVDAATDGFNHRRIIGQGRLGTVYAGTLEKEELLAVKRIHPVLVLSNAGFGFSSVLKWLSLAQHPNVVPIIGFSEAAGERVILMEFVHMASLDFYLHKNKDGASLLDWNKRLRIAAGAARGLEYLHEVVAPNIVHGCVKSSNILIDVNFCARICDYGLNFLAPVEKRGVVGYVDDEYWSERRGGGATKESDVYGLGVVLLELLTGKGCEGGLLVKWALPLIRETSFSELLDPRLVIPSDTKPLVRLAKVALACVGNSRKCRPSVAQVATILNNLETEVCL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1280 419 Gene3D Transferase(Phosphotransferase) domain 1 227 417 - -
Vra10g1280 419 Gene3D Phosphorylase Kinase; domain 1 114 225 - -
Vra10g1280 419 Pfam Protein tyrosine and serine/threonine kinase 151 408 IPR001245 GO:0004672|GO:0006468
Vra10g1280 419 SUPERFAMILY Protein kinase-like (PK-like) 125 410 IPR011009 -
Vra10g1280 419 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 86 418 - -
Vra10g1280 419 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 86 418 - -
Vra10g1280 419 ProSiteProfiles Protein kinase domain profile. 148 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1280 Vra-Chr10 18197373 18199274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1280 133 410 Receptor kinase-like Gene Family AT3G59420 40.068 1.94e-54 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vra10g1280 PK_Tyr_Ser-Thr 1.8e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1280 - - vun:114187437 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1280 10 18197373 18199274 Vra10g1280 10 18197373 18199274 ECH
Vra7g1856 7 37994563 37995934 Vra10g1280 10 18197373 18199274 PCT