Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1279 ATGGAATTCAAAGATCAGGGTGGAATTTATTATGACTTGCCGGGGTTACCACCTGGAGTGAAATTTGACCCAAGTGACCTAGAAATACTACAGTATTTGGAGGCAAAAGTTGGGTCTGATGCACGCAAGCTTCATCCCCTTATTGATGAGTTCATACCAACTATTGAAGGCGAGAATGGGATTTGGTATACCCACCCAGAAAAACTACCAGGAGTGGGCAAAGATGGACAGATCCGCCACTTCTTTCAGAGGCCATCAAAAGCATACACAACTCGAACAAGGGAAAGAAGAAAGGTTCACACGGATGAAGGAAGGGAAAGAAGAAAGGTTTACACCGATGAAGAAGGAAGTGAAACAAGATGGCACAAAACTGGAAAAACTAGAGCTGTTTTTTCAGCTGATGGTACTGTGAAGGGTTTTAAAAAAATACTAGTACTCTACACCTACTATGGCAGGAAAAAGAAGCCTGAGAAGACTAATTGGGTGATGCATCAATATCATCTTGGCAGCACTAAAAAAGAGAAAGATGGAGAATTAGTTGTTTCAAAGATCTTCTATCAGAGGCAACCCAAACAATGTGGAAGCCAAAGTATTGTAAACTCATTCAACAATGAAGGCAATGGGAATACGAACTTCAGCAATTCAATAATCACATTTGGAAGCTGTTACTATTCCTCAACTTCTGTTTGTGAGACTGAAGACTCATCAAACAGGTTTGATGATGTTGAAATGTAA 735 0.4027 MEFKDQGGIYYDLPGLPPGVKFDPSDLEILQYLEAKVGSDARKLHPLIDEFIPTIEGENGIWYTHPEKLPGVGKDGQIRHFFQRPSKAYTTRTRERRKVHTDEGRERRKVYTDEEGSETRWHKTGKTRAVFSADGTVKGFKKILVLYTYYGRKKKPEKTNWVMHQYHLGSTKKEKDGELVVSKIFYQRQPKQCGSQSIVNSFNNEGNGNTNFSNSIITFGSCYYSSTSVCETEDSSNRFDDVEM* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1279 244 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 3 104 - -
Vra10g1279 244 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 101 207 - -
Vra10g1279 244 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 104 IPR044799 GO:0003700
Vra10g1279 244 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 101 207 IPR044799 GO:0003700
Vra10g1279 244 ProSiteProfiles NAC domain profile. 16 187 IPR003441 GO:0003677|GO:0006355
Vra10g1279 244 SUPERFAMILY NAC domain 9 187 IPR036093 GO:0003677|GO:0006355
Vra10g1279 244 MobiDBLite consensus disorder prediction 89 117 - -
Vra10g1279 244 Pfam No apical meristem (NAM) protein 17 168 IPR003441 GO:0003677|GO:0006355
Vra10g1279 244 Gene3D NAC domain 26 192 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1279 Vra-Chr10 18189086 18195434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1279 5 195 NAC Transcription Factor Family AT1G28470 74.869 1.84e-98 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra10g1279 NAM 4.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1279 - - gmx:100809389 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1279 10 18189086 18195434 Vra10g1279 10 18189086 18195434 ECH