Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1278 ATGACATGGTGTAATGACTTTGATGAGGAGAAGATGATTGAATCAATGACTATTACTCAAAAGACTAGTGTTACTGACATAAAACTCCCCGAAGAAATTCGAACTGTAACATGCTCCTCCTGCGGTCATAACATTGAATTCAAAGATCAGGGTGGAATTCATGACTTGCCGGGGTTACCAGCTGGAGTGAAATTTGACCCAAATGACCAAGAAATACTAGAGCATTTAGAGGCAAAAGTGGGATCTGATGCATGCAAGCTTCATCCCCTTATTGATCAGTTCATACCAACTCTCGAAGGCGAGAATGGGATTTGTTCTACACACCCAGAAAAACTACCAGGAGTGGGAAAAGATGGACAAATCCGCCACTTCTTTCACAGGCCATCAAAAGCATACACAACTGGAACAAGGAAAAGAAGAAAGGTTCACACAGATGAAGAAGGAAGTGAAACAAGATGGCATAAAACGGGAAAAACTAGAGCTGTTTTTGCAGCTGGTGGTGCTGTGAAGGGCTTTAAAAAAATACTAGTACTCTACACCAACTATGGCAGGAAAAGGAAGCCTGAGAAGACTAATTGGGTGATGCATCAATATCATCTTGGCAGCACTGAAGAAGAGAAAGATGGAGAATTAGTTGTTTCAAAGATTTTCTATCAGACACAACCCAGACAATCCGGTAATAATCCCAATATCATAGAGGAGCCGTACGAGAAAATGTTGAATGCTGATGGAACATCAACGCCTAAAACTACAACTATTGTGGATTGCTACAATGCTCCTTACATAAATTATGATGATGTCCATTTGAGTTATAATAGGGAAAGCTCCACACAACTAATTATTCCCAGCTCGGTTGTTGCAGCTGATCACTCTTACATTCGCTATGCTATGGATGCAAAGAAAGCAAGATTTGAAACTAACAATGGGAAGAGTTTCTAG 939 0.4047 MTWCNDFDEEKMIESMTITQKTSVTDIKLPEEIRTVTCSSCGHNIEFKDQGGIHDLPGLPAGVKFDPNDQEILEHLEAKVGSDACKLHPLIDQFIPTLEGENGICSTHPEKLPGVGKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRAVFAAGGAVKGFKKILVLYTNYGRKRKPEKTNWVMHQYHLGSTEEEKDGELVVSKIFYQTQPRQSGNNPNIIEEPYEKMLNADGTSTPKTTTIVDCYNAPYINYDDVHLSYNRESSTQLIIPSSVVAADHSYIRYAMDAKKARFETNNGKSF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1278 312 Gene3D NAC domain 68 223 IPR036093 GO:0003677|GO:0006355
Vra10g1278 312 Pfam No apical meristem (NAM) protein 60 200 IPR003441 GO:0003677|GO:0006355
Vra10g1278 312 MobiDBLite consensus disorder prediction 138 153 - -
Vra10g1278 312 MobiDBLite consensus disorder prediction 132 153 - -
Vra10g1278 312 ProSiteProfiles NAC domain profile. 59 219 IPR003441 GO:0003677|GO:0006355
Vra10g1278 312 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 290 IPR044799 GO:0003700
Vra10g1278 312 SUPERFAMILY NAC domain 53 219 IPR036093 GO:0003677|GO:0006355
Vra10g1278 312 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 1 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1278 Vra-Chr10 18179256 18182706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1278 1 228 NAC Transcription Factor Family AT4G28500 70.435 3.19e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra10g1278 NAM 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1278 - - gmx:100809389 518.85