Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1275 ATGGGGTTGATCGATCTGAACACCACCGAGGATGATGAAGCTCCATTATCCGCTTCTTCTTCTTCTGCCGCTTCATCTTCTTCTTCTCACTCTGGTATAAGCACTTCTGCTTCCACCTTCGTTGGTCCTCCTCCTCCTCCTCCTCCTTCTTCCGTCTGCTTGGAACTCTGGCACGCCTGTGCGGGCCCTTTGATCTCTCTGCCCAAGAAAGGAAGTGTTGTTGTCTACTTGCCACAGGGACACTTTGAGCATGTTCAGGATTTTCCGGTCACTGCTTATGATATCCCACCCCATGTCTTCTGTCGTGTTCTTGATGTCAAGCTCCATGCAGAAGAAGGGAGCGATGAAGTATATTGCCAAGTGTTGTTGGTTCCTGAAAGTGAGCAAGTGGAGCAAAGTTTGCGTGAAGGCCAAATTGAAGCTGACGGGGAAGAGGAGGACACTGAAGCTATGGTGAAGTCAACAACTCCCCATATGTTCTGCAAGACTCTCACAGCTTCAGACACCAGTACTCATGGTGGATTTTCAGTGCCTCGCCGAGCAGCTGAAGATTGCTTTCCTCCTCTGGATTACAGTCAACAGAGACCTTCACAGGAGCTCGTGGCTAAGGATCTTCATGGCCTGGAATGGAGGTTTCGTCATATATACAGGGGCCAGCCACGGAGGCATTTGCTAACTACTGGATGGAGTGCATTTGTGAACAAAAAGAAGCTTGTTTCTGGAGATGCTGTGTTGTTTCTTAGGGGTGACGATGGAGAACTGAGATTAGGGATTCGTAGGGCAGCCCAGTTGAAAGGTTCTGGTTCCTTTGCAGTTCCCACTGGTCAGCAATTGAATCCTGGAACTTTCATGGATGTTGTTAATGCATTATCTACAAGATGTGCTTTTAGTGTTTGCTACAATCCAAGGTTTAGCTCGTCAGAATTCATCATACCTGTTCACAAATTCTTAAAGAGTCTTGATTGTTCTTATTTAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACAGAAGATGCTGCAGAGCGGAGGTTTACTGGATTAATTGCTGGAATTAGTGATGTCGATCCTGTTAGATGGCCTGGATCGAAATGGAGATGCCTACTGGTAAGGTGGGATGACATGGAAGCTGCTAGGCACAATAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCAAGTTCCAGCAACATGATGGCAGCTGGTTTGAAGAGGACCAGGATTGGAATGACTTCAACGAAGATGGAATTTCCTTCTCCCAATGGGATTGGAACATCAGACTTTGGGGAATCATTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATCCTCCCTTTGATGGTATTAATGCTCAGAGTCCCCGGTTATATGACTTAGGGAGGTACTATATTGGTCCAAACTGTCCTGGGATTCCTCCAACGGGAAATAACATCAGAATGCAGCATGCAGCATCTGATTTTTCCTGCAATGGCACAGGCTTTAGTGAATCTTTCCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGTCAACCATATGGAAGAGCATTGTCAATAGAGGAGGCTCGAGCTAATGGTCGCTTGGGACATTTTGATGGTTATCAGTTGCTTAACTCCAGAAATGGGTGGTCTGTACAGATGCATGACAATGCTCCGCATTTGCATGCATCCGTTACACCTTCTCAGGTGTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCAGTTAATCCAGTTTCTAACAGTGATTATAATAATAAAAAACACAGTAAGATGTACCAAGGTTTATGCGCATCTGAAGTGAAAGCTAGAACATTTGCTTCTCCCCCATCTGATGATCTTACTTTCTCCAGGCGAGCTCCGGAAAGGGCTAGTTCTTTAGGTATGTTTGATGTTCGTAATCAGTTGGGTAGTTCACAGTCACACAATTCTGTGTCGGCACTGAGAAACAATCAAGAGTTGGTTTCCTCATGTAAAAGTAGTTGTAGACTCTTTGGTTTTTCATTGACTGAGGACACACATGTTGCAACCAAAGAGGTTGATGCCTCTACCATCACTTTACCCATTAATGCTGGACCTTCCTTTACTAGAATTGTTGAAGAGGAGTTTCATCCTAGCAGGACACTCCAGAGCAAGGCGGTTGGAAGTAACTGCCCAAAGGGTGTGTTGCAGTATTGA 2199 0.4543 MGLIDLNTTEDDEAPLSASSSSAASSSSSHSGISTSASTFVGPPPPPPPSSVCLELWHACAGPLISLPKKGSVVVYLPQGHFEHVQDFPVTAYDIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEQSLREGQIEADGEEEDTEAMVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKGSGSFAVPTGQQLNPGTFMDVVNALSTRCAFSVCYNPRFSSSEFIIPVHKFLKSLDCSYLVGMRFRMRFETEDAAERRFTGLIAGISDVDPVRWPGSKWRCLLVRWDDMEAARHNRVSPWEIEPSGSASSSSNMMAAGLKRTRIGMTSTKMEFPSPNGIGTSDFGESLRFRKVLQGQEILGVNPPFDGINAQSPRLYDLGRYYIGPNCPGIPPTGNNIRMQHAASDFSCNGTGFSESFRFQKVLQGQEILPSQPYGRALSIEEARANGRLGHFDGYQLLNSRNGWSVQMHDNAPHLHASVTPSQVSSPSSVLMFQQAVNPVSNSDYNNKKHSKMYQGLCASEVKARTFASPPSDDLTFSRRAPERASSLGMFDVRNQLGSSQSHNSVSALRNNQELVSSCKSSCRLFGFSLTEDTHVATKEVDASTITLPINAGPSFTRIVEEEFHPSRTLQSKAVGSNCPKGVLQY* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1275 732 Gene3D - 324 397 - -
Vra10g1275 732 SUPERFAMILY DNA-binding pseudobarrel domain 153 267 IPR015300 -
Vra10g1275 732 MobiDBLite consensus disorder prediction 12 39 - -
Vra10g1275 732 Gene3D - 158 262 IPR015300 -
Vra10g1275 732 Pfam Auxin response factor 287 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vra10g1275 732 SMART B3_2 160 262 IPR003340 GO:0003677
Vra10g1275 732 ProSiteProfiles B3 DNA-binding domain profile. 160 262 IPR003340 GO:0003677
Vra10g1275 732 PANTHER AUXIN RESPONSE FACTOR 43 732 - -
Vra10g1275 732 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 43 732 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra10g1275 732 Pfam B3 DNA binding domain 160 261 IPR003340 GO:0003677
Vra10g1275 732 CDD B3_DNA 158 260 IPR003340 GO:0003677
Vra10g1275 732 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1275 Vra-Chr10 18142308 18148323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1275 159 517 B3 DNA Binding Superfamily AT2G33860 60.278 1.01e-146 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra10g1275 B3 3.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1275 K14486 - gmx:100789906 1243.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1275 10 18142308 18148323 Vra10g1275 10 18142308 18148323 ECH