Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1272 ATGGATGTTGAAGAGTTGTTTCAGGCTCAGGCTCATTTATACAAGTATACTTACAGTTTCGTTGCTTCCATGTGCCTCAAAAGTGCAGTTAACTTGGGAATACCAGACGCAATCTTCAAGAATGGCCAACCTATTACTCTCTCCGAGCTGGTCTTGGCACTTCAGATTCAACCAACGAAATCTGGTCATGTATATAGACTCATGCGCTTGCTGGTGCATGCTGGCTTCTTTGCCACAACCAAGGTTGTGAAAGATGATAAGGAAGAATTGGGGTATGATCTCACACCTTCTTCAAGGCTACTCCTTAAGGACAATGTTCCAACCTTGTCTCCTTTTGTTCGAGCAATGTTTCATCCGGCTCTAGTTCACTCATCAGAATCATTGCCAGAGTGGTTTCACAGAAATGAGACCACACCCTGTGACACTGCGTTTGGGATGAGTTTCTGGGAGTATTTGAGTCAAAACCAAGAGTTTAACGGCCTCTTCAATGAAGCAATGGTCAGTGATTCCGGGATGGTGAATTTGGTTATGAAAAACTGTAAATCTGTTTTTGAGGGACTGAATTCATTGGTTGATGTTGGTGGTGGTAAAGGAGGTGTGGGTAGGATAGTTTGTGAGTCACTGCCTAATTTGCAATGGACCGTGCTTGATCTTCCACATGTTGTTGAAAATTTGCCTGACAGTACCAATTTGAAGTTTGTGGGAGGTGACATGTTTCAGTCCATTCCTTCAGCAGATGCCGTTCTTCTCAAGTTAGTGTTGCATGCTTATAGTGATGAAGAATGCATTAAGGTACTGAAGAAATGCAAAGAAGCTGTTTCAAAGAAGGGGAAGACAGGGAAAGTAATTATCATAGACATAGTAGTTGGTCAAAGGAATGAAAATCATGAATTAACAGAAGCAAAGCTGTTTTTTGATATGATTATGATGGTCGTGGTCACTGGCAGAGAGAGAGAAGAAAAAGAATGGGAGAAACTCTTCTTGGAAGCTGGATTCAGTCATTACAAGATAACAAACATCTTTGGGCAAAAGAGGAAATAA 1041 0.415 MDVEELFQAQAHLYKYTYSFVASMCLKSAVNLGIPDAIFKNGQPITLSELVLALQIQPTKSGHVYRLMRLLVHAGFFATTKVVKDDKEELGYDLTPSSRLLLKDNVPTLSPFVRAMFHPALVHSSESLPEWFHRNETTPCDTAFGMSFWEYLSQNQEFNGLFNEAMVSDSGMVNLVMKNCKSVFEGLNSLVDVGGGKGGVGRIVCESLPNLQWTVLDLPHVVENLPDSTNLKFVGGDMFQSIPSADAVLLKLVLHAYSDEECIKVLKKCKEAVSKKGKTGKVIIIDIVVGQRNENHELTEAKLFFDMIMMVVVTGREREEKEWEKLFLEAGFSHYKITNIFGQKRK* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1272 346 Gene3D Vaccinia Virus protein VP39 102 345 IPR029063 -
Vra10g1272 346 PIRSF O-mtase 1 345 IPR016461 GO:0008168
Vra10g1272 346 Pfam Dimerisation domain 24 72 IPR012967 GO:0046983
Vra10g1272 346 Pfam O-methyltransferase domain 131 333 IPR001077 GO:0008171
Vra10g1272 346 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 341 IPR029063 -
Vra10g1272 346 SUPERFAMILY "Winged helix" DNA-binding domain 4 105 IPR036390 -
Vra10g1272 346 Gene3D - 1 101 IPR036388 -
Vra10g1272 346 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 14 346 IPR016461 GO:0008168
Vra10g1272 346 PANTHER ASMT2 3 340 - -
Vra10g1272 346 PANTHER O-METHYLTRANSFERASE 3 340 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1272 Vra-Chr10 18123901 18126326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1272 21 342 Monolignol Biosynthesis Gene Families AT5G54160 33.434 4.34e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1272 K22588 - qsu:112018723 450.284