LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra10g1264	ATGGACCAACGACATAAAGTGATTCTTCTTCAGCTGCTTCTTTTCCAAGTTCTGCTTGTTGCATCACAGACAGACAGTCGAGATTATTCTGCACTAAATTCCCTTACACAATCCTGGAGTAACAAGCCACAAAGTTGGGTGGGTCAAGATCCTTGCAGTAGCTGGGATGGAATTCGTTGCAGCAATACAAGAATTACCCAATTGAGAGTTCCAGGCTTGAATATTGGTGGCCAACTGTCTTCGGCAATTGAATCTTTATCTGAACTAGATACTCTGGATCTTTCTTACAACACGGGTTTGACGGGAACAATTCCAGAAGAAATTGGGAATATGAAAAAGCTAAAATCCCTATCATTGGTTGGTTGTGGTTTCTCTGGTCCGATTCCGGATTCAATAGGATCTTTAACGCAGCTGACCTTTCTGGCATTGAACTCTAACAGGTTCAGTGGAAATATACCACGCTCTCTAGGCAATCTAACAAATATCAATTGGCTTGATCTTGCTGAAAACGAGCTTGAAGGGACTATCCCTGTCTCTGATGACCAAGGACGCCCAGGCCTTGACCTGCTCCTTAAGGCACAACACTTTCATATGGGGAGCAATAAGCTATCTGGTACAATACCAGAAAAACTTTTCAACTCCAGTATGATTCTGGAACACGTGCTTTTTGACCACAATCAACTAGAGGGCAGTGTTCCTAGTTCCATTAGTTCTGTGGGGACATTGGAAGTTCTGCGCTTAGACAAGAATGGATTAACGGGGGGCGTGCCGGCAAACTTAAACAGACTCGGAAAACTAAGCGAAATCTATTTATCTCACAATAAGCTAAATGGAAGTCTGCCTGATTTTACTGGAATGAATAGTCTCACCTACGTGGACATGAGCGACAATGCTTTCAATGCCTCTAATGTACCTTCATGGGTTTCAAGTCTGCCAGAACTGACAACAGTGATACTTGGGCAGAACCAGGTCGGTGGCATACTAAATCTCAGTAGCTACAGCGAAAGTCTGCAACTCATAAATTTGGAGAGTAATGAAATAACAGAGATTGAACCGCAAAACAATCTACCAAGTTTTGAAATAAGACTAGCTAACAACCCAGTTTGTCGTGAAAGTGGATCTTCTGAAAATAGTTACTGCAAAGAAGCAGTACCAAATCCCTCATTTTACTCAACACCATCAAATAATTGTTCTCCTCCACCTTGCAGTTCTGATCAGATTGCCAGCCCAAATTGTATATGTGCATATCCCTATACTGGACTTCTTATATCGAGAGCTCTTAGTTTCTCAAACTTCAGTGACGCAAGTTACTATAGGGAGCTTGAGCAGTCTCTGATGGACACTTTCCGAAACCAAAGCATTCCAGTGGATTCAGTTGCTCTTAGTAACCCCATGAGAAATTCTACTTCTGATAACTTTGAAGTGACTCTTCAATGCTTCCCCTCGCAAAGCGATCGTTTCAATTCAACTGGAGTTTTAAACATTGCTTTTCTGCTTAGTAACCAAATTTATAAGCCCCCAGAGTTCTTCTCCCCTTACATCTTCAAGGGTGCTAATTATGATTACACAGGAGGAGAACCAAAATCATCAAAGTCATCACATACCGGGGTTATAGTTGGTGCTGTTGTTGCTGTTGTGGTCTTTATTGTACTGGCATCCCTTGCAGGGATGTATGCCATTCGCCAGAAAAGAAGAGCAGAAAGATCTGCAGGGTTGAACCCTTTTGCTAATTGGGAACAGAATAAGAATAGTGGCACAGCTCCTCAGTTGAAAGGAGGACGATGGTTTGCTTTTGATGACCTAAGGAAGTACACCAACAACTTCTCAGAAACCAATACTATTGGATCTGGAGGCTATGGACAGGTTTACCAAGGAACTCTTCCCTCTGGAGAGTTGGTTGCTATCAAACGGGCTGCAAAAGAATCTATGCAGGGTGCTGTTGAGTTTAAAACCGAGATTGAACTTCTATCAAGGGTCCATCACAAGAATCTCGTTAGTCTTGTGGGTTTCTGTTTTGAGAAGGGCGAACAAATGCTGGTGTATGAGTACATTCCCAATGGCACTTTAATGGATAGTCTCTCAGGAAAGTCTGGGATCTGGATGGATTGGATAAGGAGACTTAAAGTAGCATTAGGCGCAGCCAGGGGTCTGGCTTATCTTCATGAACTTGCTAACCCACCAATCATACACAGGGACATCAAATCTAGCAATATCTTACTTGATCATCACCTCAATGCAAAAGTTGCTGATTTTGGTCTCTCCAAACTTCTTGTTGATAGTGAAAGGGGCCATGTTACTACTCAAGTCAAAGGGACAATGGGATACTTGGATCCTGAATATTACATGACCCAGCAGTTGACAGAAAAGAGTGATGTATATAGCTATGGAGTGCTAATGCTGGAACTAGCAACAGCAAGAAGGCCAATAGAGCAAGGAAAGTATATTGTAAGAGAAGTAATGAGGGTAATGGACACGACAAAAGATTTATACAACCTTCATTCCATTCTAGATCCAACCATAATGAAAACAAAACCAAAAGGTTTAGAAAAGTTTGTGATGTTGGCAATGAGGTGTGTGAAAGAATATGCAGCTGAGAGGCCTACAATGGCTGAGGTTGTAAAAGAGATTGAGAGCATAATCGAGCTTGTTGGATTGAACCCGAATTCTGAATCAGCTACAACATCAGAAACTTACGAGGAAGCAGGTGGAGGAAATGCCCAACATCCTTACAGGGAAGAAGATTTTAGCTATAGTGGAATGTTTCCATCAACAAGAGTAGAACCTCAATAG	2790	0.4204	MDQRHKVILLQLLLFQVLLVASQTDSRDYSALNSLTQSWSNKPQSWVGQDPCSSWDGIRCSNTRITQLRVPGLNIGGQLSSAIESLSELDTLDLSYNTGLTGTIPEEIGNMKKLKSLSLVGCGFSGPIPDSIGSLTQLTFLALNSNRFSGNIPRSLGNLTNINWLDLAENELEGTIPVSDDQGRPGLDLLLKAQHFHMGSNKLSGTIPEKLFNSSMILEHVLFDHNQLEGSVPSSISSVGTLEVLRLDKNGLTGGVPANLNRLGKLSEIYLSHNKLNGSLPDFTGMNSLTYVDMSDNAFNASNVPSWVSSLPELTTVILGQNQVGGILNLSSYSESLQLINLESNEITEIEPQNNLPSFEIRLANNPVCRESGSSENSYCKEAVPNPSFYSTPSNNCSPPPCSSDQIASPNCICAYPYTGLLISRALSFSNFSDASYYRELEQSLMDTFRNQSIPVDSVALSNPMRNSTSDNFEVTLQCFPSQSDRFNSTGVLNIAFLLSNQIYKPPEFFSPYIFKGANYDYTGGEPKSSKSSHTGVIVGAVVAVVVFIVLASLAGMYAIRQKRRAERSAGLNPFANWEQNKNSGTAPQLKGGRWFAFDDLRKYTNNFSETNTIGSGGYGQVYQGTLPSGELVAIKRAAKESMQGAVEFKTEIELLSRVHHKNLVSLVGFCFEKGEQMLVYEYIPNGTLMDSLSGKSGIWMDWIRRLKVALGAARGLAYLHELANPPIIHRDIKSSNILLDHHLNAKVADFGLSKLLVDSERGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSYGVLMLELATARRPIEQGKYIVREVMRVMDTTKDLYNLHSILDPTIMKTKPKGLEKFVMLAMRCVKEYAAERPTMAEVVKEIESIIELVGLNPNSESATTSETYEEAGGGNAQHPYREEDFSYSGMFPSTRVEPQ*	930

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra10g1264	929	ProSiteProfiles	Protein kinase domain profile.	608	880	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra10g1264	929	MobiDBLite	consensus disorder prediction	888	929	-	-
	Vra10g1264	929	SUPERFAMILY	Protein kinase-like (PK-like)	594	887	IPR011009	-
	Vra10g1264	929	SMART	serkin_6	608	880	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra10g1264	929	PANTHER	RECEPTOR-LIKE PROTEIN 55	2	911	-	-
	Vra10g1264	929	SUPERFAMILY	L domain-like	59	368	-	-
	Vra10g1264	929	ProSitePatterns	Protein kinases ATP-binding region signature.	614	640	IPR017441	GO:0005524
	Vra10g1264	929	Pfam	Protein kinase domain	609	874	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra10g1264	929	Pfam	Leucine rich repeat	241	298	IPR001611	GO:0005515
	Vra10g1264	929	Gene3D	Transferase(Phosphotransferase) domain 1	684	896	-	-
	Vra10g1264	929	Gene3D	Ribonuclease Inhibitor	282	406	IPR032675	-
	Vra10g1264	929	CDD	STKc_IRAK	614	879	-	-
	Vra10g1264	929	PANTHER	RECEPTOR-LIKE KINASE FAMILY PROTEIN, PUTATIVE-RELATED	2	911	-	-
	Vra10g1264	929	Gene3D	Ribonuclease Inhibitor	25	183	IPR032675	-
	Vra10g1264	929	Gene3D	Ribonuclease Inhibitor	184	281	IPR032675	-
	Vra10g1264	929	ProSiteProfiles	Leucine-rich repeat profile.	336	357	IPR001611	GO:0005515
	Vra10g1264	929	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	728	740	IPR008271	GO:0004672\|GO:0006468
	Vra10g1264	929	Gene3D	Phosphorylase Kinase; domain 1	578	683	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra10g1264	Vra-Chr10	18072426	18080001	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra10g1264	8	929	Receptor kinase-like Gene Family	AT5G49760	52.366	0.0	932

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Vra10g1264		Pkinase	3.1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra10g1264	-		-	gmx:100786172	1612.82