Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1261 ATGGGAACCAACAAAAACTCTTTTTCTCAATTCCAAACAGAGTTCTTACCCTTCAACGAGAACGACCCTCAGGACATGGTCATATACCAAGTTCTCAACGAGGCCAATGCTCTCTCCAACCCTCACCAAAGACTCCACCAACCGCAATTCGCCCTCGACCCCACCAGAAACATCGCCAAAAAACACTACAGAGGAGTTCGCCGCCGACCCTGGGGGAAGTACGCCGCCGAGATTCGGGACTCCGCACGCCACGGCGCCAGAATATGGCTCGGCACTTTCCAGACCGCCGAAGAGGCCGCCATGGCTTACGACCGCGCCGCCTTCAAGATGAGAGGCGCCAAGGCTTTGCTCAATTTCCCAGCCGAAATCGTGGCTGCGGCCGCCTCAGAGTCGTCGTTCAATAATAATAATAATAATAATGATAACAACAACGATGCTGTCTCTGATTCTAGTGGTGGAAGCTCTTGCATCACCAATAATTCCACTCAGGTAAATGGGTCTCGATCAGAAAGCACAAGTAGCACTAGTTAG 531 0.516 MGTNKNSFSQFQTEFLPFNENDPQDMVIYQVLNEANALSNPHQRLHQPQFALDPTRNIAKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGAKALLNFPAEIVAAAASESSFNNNNNNNDNNNDAVSDSSGGSSCITNNSTQVNGSRSESTSSTS* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1261 176 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Vra10g1261 176 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Vra10g1261 176 CDD AP2 61 121 IPR001471 GO:0003700|GO:0006355
Vra10g1261 176 PANTHER DNA-BINDING DOMAIN 7 137 IPR044808 GO:0003700|GO:0009873
Vra10g1261 176 MobiDBLite consensus disorder prediction 134 176 - -
Vra10g1261 176 SUPERFAMILY DNA-binding domain 62 122 IPR016177 GO:0003677
Vra10g1261 176 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 7 137 - -
Vra10g1261 176 Pfam AP2 domain 62 112 IPR001471 GO:0003700|GO:0006355
Vra10g1261 176 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
Vra10g1261 176 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Vra10g1261 176 Gene3D AP2/ERF domain 61 122 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1261 Vra-Chr10 18049363 18050261 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1261 16 123 AP2-EREBP Transcription Factor Family AT5G47220 47.692 2.39e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra10g1261 AP2 5.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1261 K13433 - gmx:100811533 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1261 10 18049363 18050261 Vra10g1261 10 18049363 18050261 ECH