Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1260 ATGGATGATATTCATAGTAATCACGGTGCAACTTCTGAAGGGATTCTTGAGGATGTGTGGGCCAAAATTATGAGCAGCGATAAAGCAGATGGAAGAAAAGGTGACGCTGTAGAGTCTTGTAACTCTTGGGAAGAACTTCCTCACCTTGATGGAAGAGAAGGGTCCATGGAAATTCTACAAAGACTTCCAAGTTTAGGGAGGTGGATATCAATGGGAGCTGATTTCTGGGAACAAGTTTTAGATGGTATTGTTCTACCTAACACAAGCAATACAGAATACTGTAGCAATAACAACATTGAAATTGGAAGTGCTGGTGAATGTAATAACAAGGTGGAAGGTGGTGTGAGAATGGAGAAGGAAGTTAGAAAACAGTACAGAGGAGTTAGGAGAAGGCCTTGGGGTAAATATGCTGCAGAGATTAGAGACTCATCGAAGAAAGGTGCAAGAGTTTGGCTTGGAACATTTGAAACAGCTGAAGAAGCTGCTTTGGCTTATGACAAGGCCGCTTTGAGGATTAGGGGTCCAAAAGCATACCTTAATTTCCCACTTGAGAGGGTTGCAATGGCTTTAGGATGTGACAAGAAGGAAAATTTGATCAAGTGTAAGAAGAGGGTATCAAGGGAAATGGAAGTGTTTGATGATGATACGATGAACGAAGAACCTGCAAGAAAAAAGTTGGAATGCATGGTAGAAAATGAACTAGGTGTTTTTGTATTTCAGGATCTAGGAAGTGATTACTTGGACAGTTTGCTGTCCTCTTTTTGA 765 0.4105 MDDIHSNHGATSEGILEDVWAKIMSSDKADGRKGDAVESCNSWEELPHLDGREGSMEILQRLPSLGRWISMGADFWEQVLDGIVLPNTSNTEYCSNNNIEIGSAGECNNKVEGGVRMEKEVRKQYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFETAEEAALAYDKAALRIRGPKAYLNFPLERVAMALGCDKKENLIKCKKRVSREMEVFDDDTMNEEPARKKLECMVENELGVFVFQDLGSDYLDSLLSSF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1260 254 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF091 17 254 - -
Vra10g1260 254 Pfam AP2 domain 124 174 IPR001471 GO:0003700|GO:0006355
Vra10g1260 254 ProSiteProfiles AP2/ERF domain profile. 124 182 IPR001471 GO:0003700|GO:0006355
Vra10g1260 254 SMART rav1_2 124 188 IPR001471 GO:0003700|GO:0006355
Vra10g1260 254 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 254 - -
Vra10g1260 254 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Vra10g1260 254 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Vra10g1260 254 CDD AP2 123 182 IPR001471 GO:0003700|GO:0006355
Vra10g1260 254 Gene3D AP2/ERF domain 123 184 IPR036955 GO:0003700|GO:0006355
Vra10g1260 254 SUPERFAMILY DNA-binding domain 124 183 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1260 Vra-Chr10 18046336 18047321 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1260 15 200 AP2-EREBP Transcription Factor Family AT4G18450 45.503 6.09e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra10g1260 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1260 - - var:108341685 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1260 10 18046336 18047321 Vra10g1260 10 18046336 18047321 ECH