Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1256 ATGAATTTTCTCTTCTTTTATGTACTCATCTCCCTTGTTCTTATTAATGTCTACCAAGATGAAGCTACAACTATAGACAACCAAGTTATATCTGTTGGGGCAATCATTGATGTGAATTCTCGCATTGGGAAAGAACAGCAAATAGCCATGGACATTGCAGCTCGAAGTTACAATAGCACTTCAAAGACATACAAGTTGGCTCTATATTTTCGGAACTCCGCCGAGAATCCTCTTAAAGCCATCACTCTTGCTGAAGAGATGATTGATAAGCAAAAGGTGGAAGTGATTATCGGGATGCACAGATGGTCAGAAGCAGCTCTAGTGGCTGAAATAGGAAGCCAAGCTCAAGTTCCTATTATAGCATTTGCAGAACCCACCGTTACCCCGCCGTTGATGAGTAATAGGTGGCCTTTTCTGGTGAGAATGACTAGGAGCGATTTATCATATATCAAATGCATTGTAGATATAGTGAAAGCTTTTGGTTGGCAGAGAGTAGTTGCTATCTATGAAGATGATACATATGGAGGTGACTATGGCATGCTAGCACTGCTATCTGAGGCTCTCCGGGATGTGAGTTCATCGATTGATTATCACTTAGTTCTTCCACCTATTTCTTCTCTGCATGAACCAGGAGGGTTTATACGTGAAAAACTGTTGAAGTTGTTGCAAACCCAATCTCGCGTTTTCATTGTGCTGCGATCTTCATTAGAAATGGCTATCCATTTGTTTAAAGAAGCCTCAAAAATGGGATTCGTGGACAAAGAATCAGCATGGATACTTCCAGAGAGCATAACAAATGTGCTGGACTCTGTCAACAAGTCTGCTATTTCCTATATGGATGGAGCTTTAGGAATCAAAACGTACTACTCCGAAATAAGCACTGAGTACCAAGATTTTGAGGCTGAATTCCGGAGAACATTTTGGTCCAAGAATGTCGAGGAAGATAACCGCTACCCCGGATTTTATGCATTGCAAGCATATGATAGCATTAAAATTGTGACCCAAGCAGTAGACAGAATGACCAGTAGAAACACTAGGAGCTCAAAGAGTTTACTTGGAGAAATACTGCGTAGCAGTTTTCTTGGTTTAAGCGGTCGTATTCAATTCGAAGATGGGAAACTCCAGCAGACTTCTATTTTAAGGATGGTAAATGTGGCCGGGAAGAGTTACAAGGAACTTTGCTTTTGGAGTGAACAATATGGCTTCACCAAAAACCTCCCTACAGGAAAAGGTGGACATTCTAGCGCTGGTAATACAGAATGTTTCAGTGCTGTTCGGTGGCCTGGCAATCTGAAAAGCGATCCAAAAGGCTGGAATATGCCTACTAAACAAAATCCTATGAAAATTGCAGTTCGAAACAGAACCTCTTTTTCCAAGTTTGTCAAGGTTGATTATGATTATGAGGGCAATCCTGCAATATATAGTGGATTTTGTATCGATATTTTTAAGGGTGTGCTCGACCTTTTGGGGTATGACTTGCCATACGATTATTATCCTATTGATGGAACCTATAATGATTTGGTTCAGCTTGTCTATAACAAGAGTTATGATGCCGTAGTTGGGGACATGACCATACTAGAAGAAAGAATGCAGTATGTGGATTTTACAGTGCCATATGCAGAATCAGGATTGACAATGGTAGTTCCATCAAAGTCTAAAGAATCGGCATGGATGTTCACAAAGCCCTTTACCTGGGAAATGTGGATGGTTACGGGTGCCATCTTGATTTACACAATGTTAGCAGTTTGGTACCTTGAGAAGGAATCCAATCCCGAGTTTCATGGCAATTGGGGCAGCCAAATCAGCACAGCTCTTTGGTTTACCTTCTCCTCTTTGTTTTTCGCTCACAGGGAAAAAATGCAGAGCAACTTAACTCGCATCGTGATGGTCTCATGGCTCTTGCTAGTTCTGATCCTTAACTCATCCTACACTGCTAACCTTTCTTCAATGCTCACGGTTAAACAACTGGAATTGAATGTCCCAAATATTCAGTTCTTGAAGAGGAACAACAAGACAATTGGTTGCGATGGTGACTCATTTGTTAGGTCGTTCTTAGAGAAAGTAGAAGGGTTCCCACCTGGGAACATAAAAAATATCACTGATGAATACACGTATGATGATTTTTTTCAAAATAGCAGCATAGCAGCTGCCTTTCTTGAACTCCCATACGAAAAGGTATTCATCACTGAATACTGTAACAAATACACCGGCTCCACTCCCAGAACCAGATTTGGAGGACTGGGCTTTATGTTCCAGAAAGGGTCGCCAGTGGCCAGAGACGTGTCAAAAGCTATATTACATATGTCAGAGAATGCAGAGCTGAAGAGGTTGGAGGAGAAGTGGTTGATTAGCTCCGGCAAGTGCTCCAACACGACCTCCGACGCCAACAATACGGATAGTTTGAAGCTGAGAAGTTTATGGATTTTATATGTCATCTCTGGTGCTACTTCCACCATTTGTCTGCTACTATCAACCATCCAATCTCTGGTAAAATCCTGTCAGCAACGCCAACGCGTGGCACCAGAAGGCAATGACACCCCAAATTATCAAAATGCGTGGGAAAAGGTGATTGCACATGTAAAACAGATTTACAACAAAAAGATCAATAATTCAAGAGAGACACGGACACAGGTTATTACTGATTTTCTTCCAGTGTCTGAAATTTCAATGCTCCCTTCTCCATCACCAGGGTCACACATGACAACACAGACATAG 2715 0.4166 MNFLFFYVLISLVLINVYQDEATTIDNQVISVGAIIDVNSRIGKEQQIAMDIAARSYNSTSKTYKLALYFRNSAENPLKAITLAEEMIDKQKVEVIIGMHRWSEAALVAEIGSQAQVPIIAFAEPTVTPPLMSNRWPFLVRMTRSDLSYIKCIVDIVKAFGWQRVVAIYEDDTYGGDYGMLALLSEALRDVSSSIDYHLVLPPISSLHEPGGFIREKLLKLLQTQSRVFIVLRSSLEMAIHLFKEASKMGFVDKESAWILPESITNVLDSVNKSAISYMDGALGIKTYYSEISTEYQDFEAEFRRTFWSKNVEEDNRYPGFYALQAYDSIKIVTQAVDRMTSRNTRSSKSLLGEILRSSFLGLSGRIQFEDGKLQQTSILRMVNVAGKSYKELCFWSEQYGFTKNLPTGKGGHSSAGNTECFSAVRWPGNLKSDPKGWNMPTKQNPMKIAVRNRTSFSKFVKVDYDYEGNPAIYSGFCIDIFKGVLDLLGYDLPYDYYPIDGTYNDLVQLVYNKSYDAVVGDMTILEERMQYVDFTVPYAESGLTMVVPSKSKESAWMFTKPFTWEMWMVTGAILIYTMLAVWYLEKESNPEFHGNWGSQISTALWFTFSSLFFAHREKMQSNLTRIVMVSWLLLVLILNSSYTANLSSMLTVKQLELNVPNIQFLKRNNKTIGCDGDSFVRSFLEKVEGFPPGNIKNITDEYTYDDFFQNSSIAAAFLELPYEKVFITEYCNKYTGSTPRTRFGGLGFMFQKGSPVARDVSKAILHMSENAELKRLEEKWLISSGKCSNTTSDANNTDSLKLRSLWILYVISGATSTICLLLSTIQSLVKSCQQRQRVAPEGNDTPNYQNAWEKVIAHVKQIYNKKINNSRETRTQVITDFLPVSEISMLPSPSPGSHMTTQT* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1256 904 Pfam Receptor family ligand binding region 47 375 IPR001828 -
Vra10g1256 904 SMART GluR_14 448 784 IPR001320 GO:0015276|GO:0016020
Vra10g1256 904 PANTHER GLUTAMATE RECEPTOR 3.4 14 879 - -
Vra10g1256 904 Pfam Bacterial extracellular solute-binding proteins, family 3 467 782 IPR001638 -
Vra10g1256 904 Gene3D - 35 377 - -
Vra10g1256 904 Gene3D - 725 789 - -
Vra10g1256 904 Gene3D - 439 555 - -
Vra10g1256 904 Gene3D - 556 686 - -
Vra10g1256 904 Gene3D - 145 398 - -
Vra10g1256 904 CDD PBP1_GABAb_receptor_plant 31 406 IPR044440 -
Vra10g1256 904 Pfam Ligand-gated ion channel 783 814 IPR001320 GO:0015276|GO:0016020
Vra10g1256 904 SUPERFAMILY Periplasmic binding protein-like II 422 782 - -
Vra10g1256 904 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 14 879 - -
Vra10g1256 904 PIRSF IGluLR_plant 1 887 IPR017103 -
Vra10g1256 904 CDD GluR_Plant 445 782 - -
Vra10g1256 904 SUPERFAMILY Periplasmic binding protein-like I 27 438 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1256 Vra-Chr10 18018392 18022271 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1256 3 823 Ion Channels AT2G29120 32.550 3.71e-144 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1256 - - gmx:100818619 1425.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1256 10 18018392 18022271 Vra10g1256 10 18018392 18022271 ECH