Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1255 ATGAATTTTCAAACCCAAACTTCCAAAGCGGTATCAAATGTTTTGCTTCGGCATTCTCTAACAATCTTTGTTCTCCTCATTGGAGCTCAGGTTGCCTACAGTTTCCAAAATACAATTGTTGGCGTGGTCATTGATGTCAATTCAAAGACAGGAGAACAACAGAGAATGGCCATGCAAATTGCAGCTCAACGTTTCAATAATTATTCACAGAACCACTATATAAACCTTTTCTTCCGCGACTCTGGTGGAATTCCATTACAAGCAGCTTCATCTGCTGAAGAACTAATCATTAAGAAAAAAGTTGAAGTCATTCTTGTCATGGGGACATGGCAAGAAGCAACTCTAGTTGCTGACCAGGGAAACAGTGCTCAAATTCCAATTATTTCATTTTCTTCTCCCCCAATGACCCCTCCTGCTTCAATGCAACATCGTTGGCCATTTCTGATTCAAATGGCAAAAGATCAGGCTGCACAAATAAATTGCATTGCAGATATTATCCATGAGTTCAATTGGCGGAAGGTTATAGCTATATATGAAGACAACCCTTACAGTGGTGATTCTGAAATGTTAAGCCTCTTTTCTGAGGCTCTCCAAAAGGGTGACTCACAGATAGAGAAACGGTTAGTTCTTCCATCGTTCACATCTTTATCTGATCCGAAAGGGTTTGTTCTGACCGAATTGCTTAAGCTTTTGCCACTGCAATCTCGTGTTTTTGTTGTACTTCAAGCAACATTCCCAATGATAACCCATTTGTTCAGAGAAGCTAAGAAAATTGGATTGTTGGGGAAAGATTCAGCTTGGATAATGAACGAGGGGATCACAAGTATGTTAGACTTTGCAAACAAATCTGTTTTGTCCTCTATGGAAGGTGCTTTAGGAATCAAAACCTATTATTCTACAAGTTCTCTTTCTTATAAACAATTGCAGGAAGATTTCCAAACTGAGCATGCAAAACCAGGATCAGATGCATTACAAGCTTATGATAGCGTTACATTAATCACAAAGGCCTTGGAGAGAATGAATGGGAAATCTAGTAATTCAAGGGTGTTCTTGGAAAAATTGTTATCTAGCGATTTCAATGGTTTAAGTGGTAATATAAGATTCAAAGATGGTCATCTATTCAACACTCCGGTGTTGAGAGTGATAAACGTGGTTAACAAGGAATACAAGGAACTAGATTTTTGGACCCCGAAATTCAAGTTCGGTAAATCTCTTAAAATACTGAAAGACAGAGAAACAAAAGATGATTATGCTACAAATATCTCACTTGGTCCAGTGGTTTGGCCAGGAGGCCTAACTTCTGCTGGTCCAAAGGGATGGAAACTGCCCACTAACGCAGAACCTTTAAAAGTGGCAATTCCTATAAACCCTGCTTTTGAAAATTTTCTGAAGGAAGGCCCTCCAAAGAAATATGATGGTTTCTGTATTCGTCTTTTCCTTGAGATAATAAAAATTCTGAGTGACAAGTATGGTGACATTCCCTATGAATTTGAGTCCTTCAATGAATCCTATGATAAACTTCTACTGAATGTAATAACCAAGTCCCACGATGCCATTGTCGGGGATTTAACAATACTCGCCAACCGATCAAAGGATGTGTCGTTCACTCAACCATACACTGATTCGAGCTTATCAGTTATATTTCCAATAGAGACTGAAGGATCGATGTGGTTGTTTATGAAACCCTTTAGCTGGGAAATGTGGCTTGCTACTATTTGCATTCTCATCTACACAATGTTCACTTTATGGTTCCTGGAGCATGAGTTCAATCCAGATTTTGGTGGTCCATTGGAAAATCAGATCAGCACCACACTGTGGTTTGCCTTTTCTTCTCTATTTTTTGCTCATAGGGAGAGAATAAGAAGCAACTCTGCACGAGTAGCAGTTGGTGCATGGCTTTTTCTTGTGTTTGTAATAAACTCAAGCTACACTGCCAACCTTTCCTCAATGCTAACTGTAAAACGATGGTCACGAAGAGATATTGAGTGGCTAAAGCAAAACAAGTTATCAGTTGGTTGTGAAAACCAGAGTTCCTTTGTAAAGAACTACATGATAGATGTGTATAAGTTCCATCCAAATCAAATAATAAACGTTCATGGAGAACATGACATTATAGATAAATTCAAAAGCAAAAAAATGCATGCTCTCTTTTTTGAAAGCCCGTATGAGAGGGTTTTCTTGAACAAGTACCCCAGGGATTACACTGCAATTACAGCTGCCTATAAATTTGGAGGACTTGGCTTTGCATTTCAAAAAGGATCTCCCATGGCTAAAGAATTTTCTGAAGCCATTTTAGAACTAGCAGAAAATGGAAAACTAAAATCTTTGGAAGAGCAATGGTTGACTCCTCCCCAATGCTCAAACTCAAACTGTTCTCCAGAAACTGAAGGCCTGGCCCTCTCCAACTTCTGGATTCTCTATGTCATGTGTGCTTTCATATGCACTATCTGCGTGGTGCTGTCTGCCAGCAGCCAAACATAA 2481 0.3922 MNFQTQTSKAVSNVLLRHSLTIFVLLIGAQVAYSFQNTIVGVVIDVNSKTGEQQRMAMQIAAQRFNNYSQNHYINLFFRDSGGIPLQAASSAEELIIKKKVEVILVMGTWQEATLVADQGNSAQIPIISFSSPPMTPPASMQHRWPFLIQMAKDQAAQINCIADIIHEFNWRKVIAIYEDNPYSGDSEMLSLFSEALQKGDSQIEKRLVLPSFTSLSDPKGFVLTELLKLLPLQSRVFVVLQATFPMITHLFREAKKIGLLGKDSAWIMNEGITSMLDFANKSVLSSMEGALGIKTYYSTSSLSYKQLQEDFQTEHAKPGSDALQAYDSVTLITKALERMNGKSSNSRVFLEKLLSSDFNGLSGNIRFKDGHLFNTPVLRVINVVNKEYKELDFWTPKFKFGKSLKILKDRETKDDYATNISLGPVVWPGGLTSAGPKGWKLPTNAEPLKVAIPINPAFENFLKEGPPKKYDGFCIRLFLEIIKILSDKYGDIPYEFESFNESYDKLLLNVITKSHDAIVGDLTILANRSKDVSFTQPYTDSSLSVIFPIETEGSMWLFMKPFSWEMWLATICILIYTMFTLWFLEHEFNPDFGGPLENQISTTLWFAFSSLFFAHRERIRSNSARVAVGAWLFLVFVINSSYTANLSSMLTVKRWSRRDIEWLKQNKLSVGCENQSSFVKNYMIDVYKFHPNQIINVHGEHDIIDKFKSKKMHALFFESPYERVFLNKYPRDYTAITAAYKFGGLGFAFQKGSPMAKEFSEAILELAENGKLKSLEEQWLTPPQCSNSNCSPETEGLALSNFWILYVMCAFICTICVVLSASSQT* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1255 826 Pfam Ligand-gated ion channel 783 812 IPR001320 GO:0015276|GO:0016020
Vra10g1255 826 Gene3D - 161 318 - -
Vra10g1255 826 Gene3D - 444 556 - -
Vra10g1255 826 SUPERFAMILY Periplasmic binding protein-like II 424 783 - -
Vra10g1255 826 Pfam Receptor family ligand binding region 55 384 IPR001828 -
Vra10g1255 826 SMART GluR_14 450 783 IPR001320 GO:0015276|GO:0016020
Vra10g1255 826 PIRSF IGluLR_plant 9 824 IPR017103 -
Vra10g1255 826 Gene3D - 37 160 - -
Vra10g1255 826 Pfam Bacterial extracellular solute-binding proteins, family 3 468 782 IPR001638 -
Vra10g1255 826 Gene3D - 557 691 - -
Vra10g1255 826 Gene3D - 704 788 - -
Vra10g1255 826 PANTHER GLUTAMATE RECEPTOR 2 821 - -
Vra10g1255 826 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 821 - -
Vra10g1255 826 CDD PBP1_GABAb_receptor_plant 40 405 IPR044440 -
Vra10g1255 826 SUPERFAMILY Periplasmic binding protein-like I 39 439 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1255 Vra-Chr10 18012625 18015915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1255 23 820 Ion Channels AT2G29120 31.629 3.05e-125 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1255 - - vun:114188616 1425.61