Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1251 ATGGGTTCCAAAGACAAGCATGACGACGACGAATCGCTTAGTACAGGCCTAAAGGTGATGCTAGCAGCAGCTATCTCTTTATTTGCTGTGATTTCAATAATCATCATCGTCCATTTTAGTGTCAAATATTTCATCAGACGGCAACAAAGGAGACGCCAAAACGAGCTTCTTCACCAGATCACCACTCAGATTGCACCGATTGATGTGAGTTCTGTGGAGCCACGGAACCCTGGACTTCAAACTTCCATCATAGCATCTCTGCCTAAAGTTTTGTACAACCAAACGGAACAGTTCAAGCAAGGTGAAGTGATAGAGTGTTCGGTTTGCCTGGCCACCGTTATGGAGGATGCAATGACTAGAGTGCTACCAAATTGTAAGCACATTTTTCATGTTGGTTGTGTTGATAAATGGTTTAATTCTAACACCACGTGCCCAATTTGCCGCACTGTGGTTGACCCGAAGGTGTCACCGGAAGAAGAACATGTCCAACCCACAGCACCACCTGTTGTGGGTTTGAGAATAGGATCTTTCCATAGGATGGTTAGTAACAGTTATGATGAATCTACTATAGATATAGCAAGACACTGA 588 0.4388 MGSKDKHDDDESLSTGLKVMLAAAISLFAVISIIIIVHFSVKYFIRRQQRRRQNELLHQITTQIAPIDVSSVEPRNPGLQTSIIASLPKVLYNQTEQFKQGEVIECSVCLATVMEDAMTRVLPNCKHIFHVGCVDKWFNSNTTCPICRTVVDPKVSPEEEHVQPTAPPVVGLRIGSFHRMVSNSYDESTIDIARH* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1251 195 Pfam Ring finger domain 105 148 IPR001841 -
Vra10g1251 195 SMART FANCL_C_2 102 156 - -
Vra10g1251 195 SUPERFAMILY RING/U-box 86 156 - -
Vra10g1251 195 PANTHER RING FINGER DOMAIN-CONTAINING 1 168 - -
Vra10g1251 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Vra10g1251 195 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Vra10g1251 195 SMART ring_2 106 147 IPR001841 -
Vra10g1251 195 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 1 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1251 Vra-Chr10 17987577 17988164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1251 18 160 C3H Transcription Factor Family AT2G42360 40.559 1.39e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1251 K19038 - gmx:100779105 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1251 10 17987577 17988164 Vra10g1251 10 17987577 17988164 ECH