Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1246 ATGGAACAACAACATAAACAAGATCAGACATTAAGCATGGAAAGGATCAAAACCTTAGAGCGCATTGTCGTAATCCCTTCCCAGCCTCCCTTCCTTCAGGACCACTCACTCCCTCTCTCCCAACTCGACACCGACCCCAACCTTCACCTCACCTTTCGTTACCTCCGCGCGTACACTTCAACCGCTTCACCTACCTCCCTCGACCCTTTCAACGTCATCTCCTCCTCCCTCTCCAACGCGCTCAACCAATTCTACCCCCTCGCCGCCACACTACGTCGCCGCCCAACCTCCCCCCACCGTCTCGAACTCTGGTGTGCCGCTGCCCAGGGCATCCCCCTCGTCCGCGCCGCCGCCGATTTCACTCTTCACTCCGTCAACCACCTGGACGACCCGGCCTCGCCTCTCGCGGAGCAGTTGGTGCCCGACCCGGGTCCCGAGGAGGGACTGGAACACCCCTGCATACTCCAGGTGACGGTCTTCGCGTGCGGTGGGTTCGTCCTTGGCGCCGCCATGCACCATGCGCTATGCGACGGCATGGGGGGCACTCTGTTCTTCAACGCGGTGGCGGAGCTGGCGCGCGGGGCCACGCGGATGACGGTGGAGACGGTGTGGGAGCGTGATAGGCTTTTGGGTCCCAGAAAGCCGCCGAGAGTGGATTCACCTTTGGTCGATGAGTTTCTGCGTTTGGAAAAAGGGGTTTTGCCGTACGAGGAGGGCGTTGGCGGGGTTGCGAGAGAGTGCTTTCACGTGAAAGATGAGTGCTTGCACATGATGAAGAGATCATTGTTGGAGCAATCCGGGTTCAACTTCACCGTTTTTGAGGCTCTTGGTGCCTACATTTGGAGAGCCAAGGTGATGGCATCTGGAATTGAGGGTGAGGAGAAGGTGAAGTTTGCATACTCAATCAACATACGGAGATTGGTAAAGCCAGCAGTCCCTGGTGGGTATTGGGGCAATGGTTGTGTGCCAATGTACGTAGTGTTGAGTGCGAAGGAGTTGATAGAGAGACCCATCTGGGAAACTGCAGAGCTAATAAAAAAGAGTAAAAGCAATGTGAGCGATGAGTATGTGCGGTCTTACATAGATTATCAGGAGCTGCATTTTGGTGATGGGATCACAGCAGGAAGAGAGGTCAGTGGATTCACCGATTGGAGGCATTTGGGCCACTCAACTGTGGACTTTGGGTGGGGAGGCCCAGTTACTGTTTTGCCCCTTGGAAGGAACCTGCTTGGGAGTGTTGAGCCTTGCTTCTTTTTGCCTTATTCAACTGCCTCTTCTCAGAATAAAGAGGGCTTCAAAGTTTTGGTCACTTTGAGACATTCTGCATTACCAGCTTTCAGACAAGCCATGCAAGTCTTTTCCGCAACCCAAGACCACTGGCCCAGTCACATATAG 1395 0.547 MEQQHKQDQTLSMERIKTLERIVVIPSQPPFLQDHSLPLSQLDTDPNLHLTFRYLRAYTSTASPTSLDPFNVISSSLSNALNQFYPLAATLRRRPTSPHRLELWCAAAQGIPLVRAAADFTLHSVNHLDDPASPLAEQLVPDPGPEEGLEHPCILQVTVFACGGFVLGAAMHHALCDGMGGTLFFNAVAELARGATRMTVETVWERDRLLGPRKPPRVDSPLVDEFLRLEKGVLPYEEGVGGVARECFHVKDECLHMMKRSLLEQSGFNFTVFEALGAYIWRAKVMASGIEGEEKVKFAYSINIRRLVKPAVPGGYWGNGCVPMYVVLSAKELIERPIWETAELIKKSKSNVSDEYVRSYIDYQELHFGDGITAGREVSGFTDWRHLGHSTVDFGWGGPVTVLPLGRNLLGSVEPCFFLPYSTASSQNKEGFKVLVTLRHSALPAFRQAMQVFSATQDHWPSHI* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1246 464 PANTHER N-HYDROXYCINNAMOYL/BENZOYLTRANSFERASE, PUTATIVE-RELATED 15 455 - -
Vra10g1246 464 Gene3D - 12 224 IPR023213 -
Vra10g1246 464 Pfam Transferase family 16 450 - -
Vra10g1246 464 Gene3D - 241 451 IPR023213 -
Vra10g1246 464 PANTHER ACYL TRANSFERASE 4 15 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1246 Vra-Chr10 17965354 17967240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1246 46 448 Monolignol Biosynthesis Gene Families AT5G48930 27.644 8.64e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1246 - - vra:106774544 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1246 10 17965354 17967240 Vra10g1246 10 17965354 17967240 ECH