Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1224 ATGGGACAGCACTGTTTTCTGCATGTGCTCTGTGCTTCCTCTTTATTTTTAAGTTTGCGGAGCTCTGCTAATACTCTTATTTACTTTTCTCTCTCTGTCTCAAAGTCAGAAACAGAAACTAAGTTGTACAAGAACCAAACCCCAAACCCGCACTTTTTCAAACTTCACCATCTTAGCTTTGTTTTCTCCTTCCTCTTAAACATGTCAACTCCTTCATCATCTTCTTCTATTTGGGTGTTCTCAAACATAAAGCTTCAGTTCTTTGCCCGCATCAGACGGTTTCTCCAATCCAAAGCAACCAGAAAGCGTTTTGATACCTCCGATCGGTTTGACGCGGCTAAGGGCAGTGGTGAACACAAGAAGCCTGAAAATATTGAAACAGTACAGGTTATGCAGAAGACTGAAGAGGAGGAGGAAGAAGTTTCTGCGATCATGTTCCAGAGAACTGTCAAGATGCTTCACTTTGGAAACTGGGAAGAGAAGGAAGTGGCGGCAAAAGAGATTGAAAAGTTAGCCAAGGAAGATGTTAAGGTCAGAAAGTTGATTACAGAACTTGGGGTGGTGCCGGTGTTGGTATCTATGGCGGCGTCGCCAGTGGCTAGCCGCAGGCGAGCCGGGTTGACGGCGTTGGTCCACCTGGCTGATGGAACTTACACGAACAAGGCTTTGATAGTTGAGGCAGGAATATTGTCGAAGCTGGCAAAGACAATGGACCTTGTAGATGAATCAATAACAAGTAAATTGGCAGAGTTGCTTTTGTCACTGTCATCACTAGTAAACACTGAGTTCCCTCTTGCTTCATTAGACTTTATCCCATTACTTAGGCACATTTTTGAGACAGACACATGTTTTGACACGAAAGAATCGTGTTTGAGTGCTTTGTATAACCTATCAACTGTATTAGAAAATGCATCGGCTATGGTTTCAAGTGGGTTGGTCCCTATCCTCTTGGAAGCGTCATCGTTAAAAGAAATTTCAGAGAAAGCACTTGCCACTCTAGGGAACTTGTCAGTGACTTTGATGGGGAAGAAAGCAATAGAGAACAGCACAATGGTCCCAGAAACCTTCATTGATATTTTGTCATGGGAAGATAAGCCTAAATGCCAAGAGTTATCGGTGTATATTTTAATGATTCTAGCACATCAGAGTTCGTTGCAAAGAAAGAAGATGGCACAGGCAGGGATTGTTCCTGTGCTTCTTGAAGTGGTTTTATTGGGCAGCCCTTTGGCTCAAAAGAGAGCAATGAAACTATTGCAATGGTTTAAGGATGAAAGGCAGACTAAGATGGGGCCACATTCTGGTCCACAAACACCAAGATTTGCAATGGGATCACCTTTAAATCAAAGAGAAGCAAAAGAAGGGAAGAAAATGATGAAGAGTTTGGTGAAACAGAGTCTGCAAAGGAATATGCAAATAATAACTCACAGGGCAAATGCTGCAGGGGAATCTTCTAAATTGAAGTCTTTGATCATCAGCACAAGTTCCAAGAGTTTGCCTTATTAA 1503 0.4245 MGQHCFLHVLCASSLFLSLRSSANTLIYFSLSVSKSETETKLYKNQTPNPHFFKLHHLSFVFSFLLNMSTPSSSSSIWVFSNIKLQFFARIRRFLQSKATRKRFDTSDRFDAAKGSGEHKKPENIETVQVMQKTEEEEEEVSAIMFQRTVKMLHFGNWEEKEVAAKEIEKLAKEDVKVRKLITELGVVPVLVSMAASPVASRRRAGLTALVHLADGTYTNKALIVEAGILSKLAKTMDLVDESITSKLAELLLSLSSLVNTEFPLASLDFIPLLRHIFETDTCFDTKESCLSALYNLSTVLENASAMVSSGLVPILLEASSLKEISEKALATLGNLSVTLMGKKAIENSTMVPETFIDILSWEDKPKCQELSVYILMILAHQSSLQRKKMAQAGIVPVLLEVVLLGSPLAQKRAMKLLQWFKDERQTKMGPHSGPQTPRFAMGSPLNQREAKEGKKMMKSLVKQSLQRNMQIITHRANAAGESSKLKSLIISTSSKSLPY* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1224 500 SUPERFAMILY ARM repeat 150 420 IPR016024 -
Vra10g1224 500 MobiDBLite consensus disorder prediction 427 453 - -
Vra10g1224 500 SMART arm_5 175 215 IPR000225 GO:0005515
Vra10g1224 500 SMART arm_5 299 338 IPR000225 GO:0005515
Vra10g1224 500 SMART arm_5 217 257 IPR000225 GO:0005515
Vra10g1224 500 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 135 500 - -
Vra10g1224 500 Gene3D - 124 468 IPR011989 -
Vra10g1224 500 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 135 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1224 Vra-Chr10 17818610 17821838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1224 123 446 U-box Gene Family AT1G67530 30.460 1.07e-20 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1224 - - gmx:100813828 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1224 10 17818610 17821838 Vra10g1224 10 17818610 17821838 ECH