Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1217 ATGCCCGACTTTAACGACTCCATCGCGCCGCCGTCGCGCCCCGTCCCCGTTCGCGAGGACTGCTGGTCCGAGGAGGCCTCTTCCACGCTTGTTGACGCCTGGGGCCGACGCTACCTCGAGCTCAACCGCGGCAACCTCCGCCAGAAGGATTGGCAGGATGTTGCCGATGCTGTCAACGCGCTCCACGGACACACCAAGAAGACGCACCGCACAGACGTCCAGTGCAAGAACCGCATCGATACCATAAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCGTCCTCCAACGGTACTCTCTCTTCCTCCTGGCCATTCTACGAACGATTGGATGCTCTGATTGGCCCTAATTTCAACGCCAAGAAACCTCCTTCCTCCTCGCCGTCTCCTTCGCCGCCTGTGGCTCTTCCGCTGCTTCCGCATCGGAAGAACCCTTCCTCCTCGCCTGCGATTGCGGTGACACCGACGGCCGTCGCGCTGCCTCAGAAGCGCTCCGCCGCTGCGGCGGCGATGGACGAGGGTTATTTCAGAAGGAATTACTCCGCTGTTGCTGCGGCTGCGGCGGCTGCGGAGGCTGACGAAGACGAGGAGGAAGAGGAAGAGGAGGAGGCGGACGATGTGGAGGAGGAGGAGGACGAAGATGAAGGGAGGGGGAGCGAGGTGGAGGAAGGGGAGAAGGAGAGGGAAGGGATGAGGAGGCTGGCGAAGGCGATAGAGAGGTTTGGTGAAGTGTATGAGAGAGTGGAGGGTCAGAAGCTGAGGCAGATGGTGGATTTGGAGAAACAGAGGATGCAGTTTGCTAAAGATCTCGAAGTTCAGAGGATGCAGATGTTTATGGACACACAGGTTCAGCTCGAGAGAATTAAGCGCGGGAAACGATCTGGCTCTAACGGTACGACACATTATTTGCTTGAAGAAAGGAGGATAACGATATGTATAGCTAGCCTGGTGAAGTGGGCGATGGTTGGATGA 972 0.5751 MPDFNDSIAPPSRPVPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSSSNGTLSSSWPFYERLDALIGPNFNAKKPPSSSPSPSPPVALPLLPHRKNPSSSPAIAVTPTAVALPQKRSAAAAAMDEGYFRRNYSAVAAAAAAAEADEDEEEEEEEEADDVEEEEDEDEGRGSEVEEGEKEREGMRRLAKAIERFGEVYERVEGQKLRQMVDLEKQRMQFAKDLEVQRMQMFMDTQVQLERIKRGKRSGSNGTTHYLLEERRITICIASLVKWAMVG* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1217 323 Pfam Myb/SANT-like DNA-binding domain 19 113 IPR044822 -
Vra10g1217 323 Gene3D - 22 88 - -
Vra10g1217 323 MobiDBLite consensus disorder prediction 190 220 - -
Vra10g1217 323 MobiDBLite consensus disorder prediction 118 150 - -
Vra10g1217 323 MobiDBLite consensus disorder prediction 187 231 - -
Vra10g1217 323 Coils Coil 183 217 - -
Vra10g1217 323 MobiDBLite consensus disorder prediction 123 139 - -
Vra10g1217 323 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 9 297 IPR044823 -
Vra10g1217 323 PANTHER OS05G0560600 PROTEIN 9 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1217 Vra-Chr10 17754131 17759558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1217 18 155 Trihelix Transcription Factor Family AT3G14180 48.276 8.50e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra10g1217 Myb_DNA-bind_4 6.5e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1217 - - gmx:100785349 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1217 10 17754131 17759558 Vra10g1217 10 17754131 17759558 ECH