Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1210 ATGTCAGAAGGACATGAGATTCATAACAATGAGGAAAGTTCATCAGGATGTTCCCAGAAGTGCTCTTCATTTGACTTGAATGCAGAAGCTTGCAGTGACGATAACACTAATGGTACTACAGGAGATGGGTATGAGCTCACAACAAACGAGAATAATATTGAGAAAGTCAACGACGAGGGAACTTCAGCAAATGGAAGTAGCATTTCAAGAGAAGGCAATGCCAGAAGAGGAACTGTGAGACAATATGTTAGATCCAAGATGCCTCGGCTTCGTTGGACTCCTGAACTTCATCATTCATTTGTTCATGTTGTTGAAAGACTTGGTGGTCAAGAGAGAGCAACACCCAAGTTGGTGCTTCAGCTAATGAATGTGCAAGGACTCAGCATTGCTCACGTCAAGAGCCACTTGCAGATGTATCGAAGCAAGAAACTTGACGAGGCTGGGCAAGTACTAAGTCAAACGTATAGGTGGAACCAAAACCAAAAGTTACGTAGATCTGTGATACTCCATGAGTCCATGAGTCCTCAACAACATCTTAAGATGGGGAATGGTGGAATCATTCTGGCAACTCAATTCAACAAACATTGTCATTTCCCAAGTCTCATGGACACCCCTTTTCCCTTGTCATCTTCCCATACAAATGACACTGATTCAAGGCAGCAGCAATGGTACATCAATCATCAAAGTTTTAGAAAATCAATAGCTTCTGGCCATATTCAGGCAAAGGATACAACTACGAGACCAAGCAAATTGCTTGAAGAGAAAAGCTGGATTCCGTTAGAAATTAAAAGCAATCATCAATCCAAGTTCCAGAAATTAGCTGCCAATGTAGCTCCGAAAAATAATGGATCACAAGCAGTTCAGCTAGCTGAATGGAGCTTCGTGAACAAAACAAGCGTCAGAGAATATTTATCGAACAAATCCAATGAACCTCGCAACTATTCCAACAATTTAAAGCTAGATTTTGATCCACCATTTCGGATTAAGAAAGACGAACAAGAAGTACCTAATTTGCAACTGGGTTTGAGTTACACAGTTGCAAGCGATGGTGGCAAGATGGATCATTATAGAGAAAACCAAGAAATCAGCACCAAGCTTTCACTTTCTTAA 1110 0.4099 MSEGHEIHNNEESSSGCSQKCSSFDLNAEACSDDNTNGTTGDGYELTTNENNIEKVNDEGTSANGSSISREGNARRGTVRQYVRSKMPRLRWTPELHHSFVHVVERLGGQERATPKLVLQLMNVQGLSIAHVKSHLQMYRSKKLDEAGQVLSQTYRWNQNQKLRRSVILHESMSPQQHLKMGNGGIILATQFNKHCHFPSLMDTPFPLSSSHTNDTDSRQQQWYINHQSFRKSIASGHIQAKDTTTRPSKLLEEKSWIPLEIKSNHQSKFQKLAANVAPKNNGSQAVQLAEWSFVNKTSVREYLSNKSNEPRNYSNNLKLDFDPPFRIKKDEQEVPNLQLGLSYTVASDGGKMDHYRENQEISTKLSLS* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1210 369 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 369 - -
Vra10g1210 369 SUPERFAMILY Homeodomain-like 86 142 IPR009057 -
Vra10g1210 369 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 88 143 IPR006447 GO:0003677
Vra10g1210 369 MobiDBLite consensus disorder prediction 34 74 - -
Vra10g1210 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 144 IPR017930 -
Vra10g1210 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 369 IPR044848 GO:0003700
Vra10g1210 369 MobiDBLite consensus disorder prediction 34 79 - -
Vra10g1210 369 Gene3D - 87 144 - -
Vra10g1210 369 Pfam Myb-like DNA-binding domain 90 140 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1210 Vra-Chr10 17698530 17703066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1210 79 149 G2-like Transcription Factor Family AT2G42660 74.648 2.23e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra10g1210 Myb_DNA-binding 2.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1210 - - gmx:102669757 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1210 10 17698530 17703066 Vra10g1210 10 17698530 17703066 ECH