Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1208 ATGGAACTAAGATGGAACACATTTGGATTTTGTCTAAGAATTTATATTTTCTTGTTCTCACTGTGGGGAATCCGAGATTGTTGGTCCGTTAACGATGAAGGACTGGCTTTGTTAGCGTTTCAAGCGAGAATAACCAGTGATCCCTTTAATGCGTTGGTGAATTGGAATCCCAATGATTGTGACCCTTGCGGGTGGTTGGGTGTTCATTGTGTAGATGGTAAAGTGCAAGTCTTGGACTTAAAAGGGTTATCATTGGAAGGGACGCTGGCTCCTGAGCTTGGCAAACTTAATCATCTAAATTCTATTGTTTTATGCAAGAATAACTTTTCTGGTGCCATTCCCAAAGAACTTGGAGATTTACCCAAGCTAGAGTTATTAGATTTAAGGGAAAATAATTTGTCAGGAAACATCCCAGCAGAAATTGGCAACATGTCGTTATTAAAACACTTTGTGTGGCAACGTAACTTCAACCAATGGTACAAATCAGATTCATTGATTATTCTAACCAAAGCAAAACTTAAGAAATTCGCCAATGCCTTTGCTTGGCCACTATTCAAACTAGGGAAGACTGCCTCTCATGGCAATGAAAAAGATTATTGTGACATTCTGCCCAGTTCTGATGTGCCAAAGATAGCCCAAAATGTACCAGAAATTGTTAGTTCTACACGTCGTAAGTTACTTCAGTCTAGTGGTAATAACCTTGCAGCTGTACCTTTCGATGACAAAACACCAATAGAGTTTAGCACTGCTCCAACTACCTTCAGTACTGGAGCTATTCCTGCTGTTCCGGATGCCACTGAGAAACAAAATCAGCCTGCACCCTCAGATCCTAATGCTCCTGATGATGCTTCTGATAAAAATCAATCACAAGATGCTTCCGATGGAAATCAAGAAAGTCAAGATGTAAATAATGGTGCTTCTGTGTGGAAGTGGATAATTATTATTCTTCTTCTGCTGGCCATTATTATCATAATTCTTTTATACATTTGGCGAAAACGAGCCGCAAAAGTAATAGGCCCCTGGAAGACAGGAATAAGTGGACAGTTGCGGAAAGCATTTATAACAGGGGTTCCCAAGTTGAATAGAGCAGAATTAGAGACAGCCTGTGAAGATTTTAGCAATATTGTTATTGATTCTTATGCCGAGTGCACCATCTACAAAGGAACATTGTCTAGTGGAGTTGAGATTGCTGTAGTTTCTACTCTAATTACTTCTTCTAAGAATTGGTCAAAGAGCATGGAGATAAGATATCGCAAAAAGATTGATAATTTGTCTCGCATAAATCATAAGAACTTTATTAATCTTATTGGCTACTGCGAAGAAGAAGAACCATTCACTAGGATGTTGGTGTTTGAGTATGCTCCAAATGGAACCTTATTTGAGCATTTACATGTTTCGCATTTGGAACGTATTGATTGGAGTGCAAGGGTAAAGATTATCATGGGGGTTGCGTATTGCCTTCAATACATGCACCATGACTTAAATCCACCTATGGCACAAAGCAAGCTAACTTCAAATATGATATTTTTAACAGATGATTTTTCTGCTAAGGTTGCAGAGGTAACTTTTAAACAGATTGTGTCACCAGAGAGCGTGGGTGATTCAAATAAATCTGATGATGGGCCATCCCAAGAGAATATTGAAACCAATGTTTACAAATTTGGAGAGTTATTGCTGGAAATCATCTCAGGGAAATTACCTTACTCGGAAGAACATGGCAACCTAGTGGACTGGGCTGCTAAGTACTTAAACGAGAAAACAAACCTCAAAGATTTGGTGGATCCCACCCTACACTGTTTCAAGGAGAACGAACTTCATTGCATTTGTGATGTGATCCAAGATTGTACCAAACCTGATGTAAAGTCAAGACCAACAATGAGGGACGTGACTTCCAAATTAAGGGAAGTGCTTGGTTTGTCACCTGAGCAAGTGGTCCCAAGACTTTCTCCACTCTGGTGGGCTGAATTGGAGATCTTGTCTGTGGAGACGACTTAA 1995 0.397 MELRWNTFGFCLRIYIFLFSLWGIRDCWSVNDEGLALLAFQARITSDPFNALVNWNPNDCDPCGWLGVHCVDGKVQVLDLKGLSLEGTLAPELGKLNHLNSIVLCKNNFSGAIPKELGDLPKLELLDLRENNLSGNIPAEIGNMSLLKHFVWQRNFNQWYKSDSLIILTKAKLKKFANAFAWPLFKLGKTASHGNEKDYCDILPSSDVPKIAQNVPEIVSSTRRKLLQSSGNNLAAVPFDDKTPIEFSTAPTTFSTGAIPAVPDATEKQNQPAPSDPNAPDDASDKNQSQDASDGNQESQDVNNGASVWKWIIIILLLLAIIIIILLYIWRKRAAKVIGPWKTGISGQLRKAFITGVPKLNRAELETACEDFSNIVIDSYAECTIYKGTLSSGVEIAVVSTLITSSKNWSKSMEIRYRKKIDNLSRINHKNFINLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHVSHLERIDWSARVKIIMGVAYCLQYMHHDLNPPMAQSKLTSNMIFLTDDFSAKVAEVTFKQIVSPESVGDSNKSDDGPSQENIETNVYKFGELLLEIISGKLPYSEEHGNLVDWAAKYLNEKTNLKDLVDPTLHCFKENELHCICDVIQDCTKPDVKSRPTMRDVTSKLREVLGLSPEQVVPRLSPLWWAELEILSVETT* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1208 664 ProSiteProfiles Protein kinase domain profile. 332 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1208 664 SUPERFAMILY Protein kinase-like (PK-like) 382 633 IPR011009 -
Vra10g1208 664 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vra10g1208 664 PANTHER PROTEIN MALE DISCOVERER 2 1 664 - -
Vra10g1208 664 SUPERFAMILY L domain-like 29 158 - -
Vra10g1208 664 MobiDBLite consensus disorder prediction 268 302 - -
Vra10g1208 664 Gene3D Transferase(Phosphotransferase) domain 1 454 641 - -
Vra10g1208 664 Gene3D Ribonuclease Inhibitor 29 181 IPR032675 -
Vra10g1208 664 Pfam Protein tyrosine and serine/threonine kinase 384 633 IPR001245 GO:0004672|GO:0006468
Vra10g1208 664 Gene3D Phosphorylase Kinase; domain 1 345 453 - -
Vra10g1208 664 PANTHER LRR RECEPTOR-LIKE KINASE 1 664 - -
Vra10g1208 664 MobiDBLite consensus disorder prediction 258 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1208 Vra-Chr10 17678282 17683937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1208 27 638 Receptor kinase-like Gene Family AT2G42290 26.567 5.86e-47 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vra10g1208 PK_Tyr_Ser-Thr 9.3e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1208 - - vun:114189247 1162.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1208 10 17678282 17683937 Vra10g1208 10 17678282 17683937 ECH
Vra10g1208 10 17678282 17683937 Vra7g2204 7 42005435 42008931 ECH